Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC2.18□□□□□ -2.06
HSPG2P98160 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC2.18□□□□□ -2.06
HSPG2P98160 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.18□□□□□ -2.06
HSPG2P98160 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.18□□□□□ -2.06
HSPG2P98160 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
HSPG2P98160 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
HSPG2P98160 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
HSPG2P98160 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
HSPG2P98160 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC2.18□□□□□ -2.06
HSPG2P98160 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC2.18□□□□□ -2.06
HSPG2P98160 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC2.18□□□□□ -2.06
HSPG2P98160 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
HSPG2P98160 RNA5SP197-201ENST00000363357 119 ntBASIC2.18□□□□□ -2.06
HSPG2P98160 MRPS33P4-201ENST00000434892 317 ntBASIC2.18□□□□□ -2.06
HSPG2P98160 ATP5C1P1-201ENST00000441945 895 ntBASIC2.18□□□□□ -2.06
HSPG2P98160 RPS20P32-201ENST00000456044 356 ntBASIC2.18□□□□□ -2.06
HSPG2P98160 U3.44-201ENST00000458938 192 ntBASIC2.18□□□□□ -2.06
HSPG2P98160 RN7SKP46-201ENST00000515942 234 ntBASIC2.18□□□□□ -2.06
HSPG2P98160 AC026979.4-201ENST00000606555 645 ntBASIC2.18□□□□□ -2.06
HSPG2P98160 AC007656.2-201ENST00000624902 4547 ntBASIC2.18□□□□□ -2.06
HSPG2P98160 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
HSPG2P98160 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC2.18□□□□□ -2.06
HSPG2P98160 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC2.18□□□□□ -2.06
HSPG2P98160 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
HSPG2P98160 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC2.18□□□□□ -2.06
HSPG2P98160 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
HSPG2P98160 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
HSPG2P98160 RN7SKP53-201ENST00000411337 315 ntBASIC2.18□□□□□ -2.06
HSPG2P98160 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
HSPG2P98160 DEFB109F-201ENST00000491870 277 ntBASIC2.18□□□□□ -2.06
HSPG2P98160 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC2.18□□□□□ -2.06
HSPG2P98160 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC2.18□□□□□ -2.06
HSPG2P98160 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC2.18□□□□□ -2.06
HSPG2P98160 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC2.18□□□□□ -2.06
HSPG2P98160 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
HSPG2P98160 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
HSPG2P98160 HSPA8P19-201ENST00000505359 1517 ntBASIC2.18□□□□□ -2.06
HSPG2P98160 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
HSPG2P98160 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
HSPG2P98160 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
HSPG2P98160 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
HSPG2P98160 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
HSPG2P98160 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
HSPG2P98160 RNU1-140P-201ENST00000365040 165 ntBASIC2.17□□□□□ -2.06
HSPG2P98160 BMS1P22-201ENST00000414726 313 ntBASIC2.17□□□□□ -2.06
HSPG2P98160 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC2.17□□□□□ -2.06
HSPG2P98160 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC2.17□□□□□ -2.06
HSPG2P98160 AL513175.1-201ENST00000431492 780 ntBASIC2.17□□□□□ -2.06
HSPG2P98160 AC108734.1-201ENST00000439549 399 ntBASIC2.17□□□□□ -2.06
HSPG2P98160 OR4C2P-201ENST00000530855 1064 ntBASIC2.17□□□□□ -2.06
HSPG2P98160 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC2.17□□□□□ -2.06
HSPG2P98160 MIR8069-1-201ENST00000616627 86 ntBASIC2.17□□□□□ -2.06
HSPG2P98160 MIR8069-2-201ENST00000621412 86 ntBASIC2.17□□□□□ -2.06
HSPG2P98160 AF117829.1-206ENST00000621883 3802 ntBASIC2.17□□□□□ -2.06
HSPG2P98160 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC2.17□□□□□ -2.06
HSPG2P98160 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
HSPG2P98160 AC006971.1-201ENST00000407916 4486 ntBASIC2.17□□□□□ -2.06
HSPG2P98160 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
HSPG2P98160 MIR422A-201ENST00000362286 90 ntBASIC2.17□□□□□ -2.06
HSPG2P98160 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
HSPG2P98160 AL138885.1-201ENST00000405921 675 ntBASIC2.17□□□□□ -2.06
HSPG2P98160 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
HSPG2P98160 AC011742.1-201ENST00000431448 434 ntBASIC2.17□□□□□ -2.06
HSPG2P98160 GEMIN8P3-201ENST00000445417 720 ntBASIC2.17□□□□□ -2.06
HSPG2P98160 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
HSPG2P98160 RNU6-579P-201ENST00000516879 102 ntBASIC2.17□□□□□ -2.06
HSPG2P98160 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC2.17□□□□□ -2.06
HSPG2P98160 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC2.17□□□□□ -2.06
HSPG2P98160 AL353600.1-201ENST00000608148 251 ntBASIC2.17□□□□□ -2.06
HSPG2P98160 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC2.17□□□□□ -2.06
HSPG2P98160 AC015871.5-202ENST00000623252 701 ntBASIC2.17□□□□□ -2.06
HSPG2P98160 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC2.17□□□□□ -2.06
HSPG2P98160 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
HSPG2P98160 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
HSPG2P98160 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC2.17□□□□□ -2.06
HSPG2P98160 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
HSPG2P98160 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC2.17□□□□□ -2.06
HSPG2P98160 STAG2-201ENST00000218089 5218 ntAPPRIS ALT1 TSL 1 (best) BASIC2.17□□□□□ -2.06
HSPG2P98160 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC2.17□□□□□ -2.06
HSPG2P98160 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
HSPG2P98160 AL365361.1-201ENST00000566942 3481 ntBASIC2.17□□□□□ -2.06
HSPG2P98160 RNU6-7-201ENST00000364784 107 ntBASIC2.17□□□□□ -2.06
HSPG2P98160 RNU6-8-201ENST00000365467 107 ntBASIC2.17□□□□□ -2.06
HSPG2P98160 AL139413.1-201ENST00000421309 217 ntBASIC2.17□□□□□ -2.06
HSPG2P98160 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC2.17□□□□□ -2.06
HSPG2P98160 Z93242.1-201ENST00000427102 353 ntBASIC2.17□□□□□ -2.06
HSPG2P98160 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC2.17□□□□□ -2.06
HSPG2P98160 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC2.17□□□□□ -2.06
HSPG2P98160 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC2.17□□□□□ -2.06
HSPG2P98160 AC010149.2-201ENST00000637608 315 ntBASIC2.17□□□□□ -2.06
HSPG2P98160 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC2.17□□□□□ -2.06
HSPG2P98160 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
HSPG2P98160 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
HSPG2P98160 AL359693.1-201ENST00000614959 2407 ntBASIC2.17□□□□□ -2.06
HSPG2P98160 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
HSPG2P98160 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC2.17□□□□□ -2.06
HSPG2P98160 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
HSPG2P98160 SRIP2-201ENST00000428470 166 ntBASIC2.17□□□□□ -2.06
HSPG2P98160 DYNLL1P7-201ENST00000429273 258 ntBASIC2.17□□□□□ -2.06
HSPG2P98160 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms