Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SNORA70H-201ENST00000383910 135 ntBASIC5.6□□□□□ -1.51
RNF4P78317 SNORA70J-201ENST00000384182 135 ntBASIC5.6□□□□□ -1.51
RNF4P78317 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
RNF4P78317 AC087752.1-201ENST00000391360 558 ntBASIC5.6□□□□□ -1.51
RNF4P78317 AC068050.1-201ENST00000394891 380 ntBASIC5.6□□□□□ -1.51
RNF4P78317 EEF1A1P40-201ENST00000412883 573 ntBASIC5.6□□□□□ -1.51
RNF4P78317 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC5.6□□□□□ -1.51
RNF4P78317 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
RNF4P78317 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC5.6□□□□□ -1.51
RNF4P78317 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC5.6□□□□□ -1.51
RNF4P78317 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC5.6□□□□□ -1.51
RNF4P78317 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC5.6□□□□□ -1.51
RNF4P78317 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC5.6□□□□□ -1.51
RNF4P78317 AL445466.1-201ENST00000448432 357 ntBASIC5.6□□□□□ -1.51
RNF4P78317 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC5.6□□□□□ -1.51
RNF4P78317 BX842559.2-201ENST00000451418 605 ntBASIC5.6□□□□□ -1.51
RNF4P78317 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC5.6□□□□□ -1.51
RNF4P78317 MTCO3P2-201ENST00000457365 171 ntBASIC5.6□□□□□ -1.51
RNF4P78317 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC5.6□□□□□ -1.51
RNF4P78317 HMGN1P10-201ENST00000474557 553 ntBASIC5.6□□□□□ -1.51
RNF4P78317 AC023194.1-201ENST00000493084 308 ntBASIC5.6□□□□□ -1.51
RNF4P78317 RPSAP51-201ENST00000497462 645 ntBASIC5.6□□□□□ -1.51
RNF4P78317 NIFKP7-201ENST00000503365 834 ntBASIC5.6□□□□□ -1.51
RNF4P78317 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC5.6□□□□□ -1.51
RNF4P78317 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC5.6□□□□□ -1.51
RNF4P78317 AC025458.1-201ENST00000506046 166 ntBASIC5.6□□□□□ -1.51
RNF4P78317 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC5.6□□□□□ -1.51
RNF4P78317 B4GALNT2P1-201ENST00000508857 307 ntBASIC5.6□□□□□ -1.51
RNF4P78317 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
RNF4P78317 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC5.6□□□□□ -1.51
RNF4P78317 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC5.6□□□□□ -1.51
RNF4P78317 SOD1P3-201ENST00000518682 454 ntBASIC5.6□□□□□ -1.51
RNF4P78317 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC5.6□□□□□ -1.51
RNF4P78317 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC5.6□□□□□ -1.51
RNF4P78317 ARL2BPP2-201ENST00000550907 489 ntBASIC5.6□□□□□ -1.51
RNF4P78317 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC5.6□□□□□ -1.51
RNF4P78317 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC5.6□□□□□ -1.51
RNF4P78317 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC5.6□□□□□ -1.51
RNF4P78317 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC5.6□□□□□ -1.51
RNF4P78317 RPS3AP23-202ENST00000574601 686 ntBASIC5.6□□□□□ -1.51
RNF4P78317 MIR4795-201ENST00000584182 89 ntBASIC5.6□□□□□ -1.51
RNF4P78317 AP001429.1-201ENST00000602568 530 ntBASIC5.6□□□□□ -1.51
RNF4P78317 AC068790.5-201ENST00000602741 355 ntBASIC5.6□□□□□ -1.51
RNF4P78317 AL138895.2-201ENST00000603019 178 ntBASIC5.6□□□□□ -1.51
RNF4P78317 AC103792.1-201ENST00000603591 919 ntBASIC5.6□□□□□ -1.51
RNF4P78317 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC5.6□□□□□ -1.51
RNF4P78317 RMST_3.1-201ENST00000611651 109 ntBASIC5.6□□□□□ -1.51
RNF4P78317 AC135507.2-201ENST00000612443 309 ntBASIC5.6□□□□□ -1.51
RNF4P78317 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.6□□□□□ -1.51
RNF4P78317 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.6□□□□□ -1.51
RNF4P78317 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC5.6□□□□□ -1.51
RNF4P78317 AL136228.1-201ENST00000622221 319 ntBASIC5.6□□□□□ -1.51
RNF4P78317 CR392039.4-201ENST00000624968 501 ntBASIC5.6□□□□□ -1.51
RNF4P78317 MIR1910-201ENST00000636955 80 ntBASIC5.6□□□□□ -1.51
RNF4P78317 AC010149.2-201ENST00000637608 315 ntBASIC5.6□□□□□ -1.51
RNF4P78317 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
RNF4P78317 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
RNF4P78317 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
RNF4P78317 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC5.6□□□□□ -1.51
RNF4P78317 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
RNF4P78317 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC5.6□□□□□ -1.51
RNF4P78317 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.6□□□□□ -1.51
RNF4P78317 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
RNF4P78317 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC5.6□□□□□ -1.51
RNF4P78317 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
RNF4P78317 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
RNF4P78317 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
RNF4P78317 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
RNF4P78317 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
RNF4P78317 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
RNF4P78317 AC092162.3-201ENST00000624511 1624 ntBASIC5.59□□□□□ -1.51
RNF4P78317 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.59□□□□□ -1.51
RNF4P78317 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
RNF4P78317 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
RNF4P78317 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
RNF4P78317 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC5.59□□□□□ -1.51
RNF4P78317 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
RNF4P78317 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
RNF4P78317 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
RNF4P78317 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.59□□□□□ -1.51
RNF4P78317 ARL4AP5-201ENST00000404372 599 ntBASIC5.59□□□□□ -1.51
RNF4P78317 RNU2-22P-201ENST00000411266 212 ntBASIC5.59□□□□□ -1.51
RNF4P78317 RPS20P15-201ENST00000412792 311 ntBASIC5.59□□□□□ -1.51
RNF4P78317 TEX41-204ENST00000423031 491 ntTSL 4 BASIC5.59□□□□□ -1.51
RNF4P78317 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC5.59□□□□□ -1.51
RNF4P78317 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC5.59□□□□□ -1.51
RNF4P78317 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC5.59□□□□□ -1.51
RNF4P78317 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC5.59□□□□□ -1.51
RNF4P78317 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC5.59□□□□□ -1.51
RNF4P78317 RPL23AP40-201ENST00000487630 390 ntBASIC5.59□□□□□ -1.51
RNF4P78317 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC5.59□□□□□ -1.51
RNF4P78317 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC5.59□□□□□ -1.51
RNF4P78317 RN7SKP96-201ENST00000516948 297 ntBASIC5.59□□□□□ -1.51
RNF4P78317 RNU6-714P-201ENST00000516963 103 ntBASIC5.59□□□□□ -1.51
RNF4P78317 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC5.59□□□□□ -1.51
RNF4P78317 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
RNF4P78317 CASP1-212ENST00000531166 300 ntTSL 5 BASIC5.59□□□□□ -1.51
RNF4P78317 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC5.59□□□□□ -1.51
RNF4P78317 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
RNF4P78317 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms