Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.51□□□□□ -1.85
FOXA1P55317 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.51□□□□□ -1.85
FOXA1P55317 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
FOXA1P55317 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.51□□□□□ -1.85
FOXA1P55317 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.5□□□□□ -1.85
FOXA1P55317 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
FOXA1P55317 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
FOXA1P55317 RNA5SP479-201ENST00000364858 117 ntBASIC3.5□□□□□ -1.85
FOXA1P55317 RNU6-1320P-201ENST00000390838 107 ntBASIC3.5□□□□□ -1.85
FOXA1P55317 RNU6-1269P-201ENST00000391139 107 ntBASIC3.5□□□□□ -1.85
FOXA1P55317 MTND4P22-201ENST00000413116 1169 ntBASIC3.5□□□□□ -1.85
FOXA1P55317 RAB9AP4-201ENST00000415230 609 ntBASIC3.5□□□□□ -1.85
FOXA1P55317 OR6K4P-201ENST00000423179 955 ntBASIC3.5□□□□□ -1.85
FOXA1P55317 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC3.5□□□□□ -1.85
FOXA1P55317 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC3.5□□□□□ -1.85
FOXA1P55317 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.5□□□□□ -1.85
FOXA1P55317 AC004975.1-201ENST00000428733 208 ntBASIC3.5□□□□□ -1.85
FOXA1P55317 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC3.5□□□□□ -1.85
FOXA1P55317 RPS27AP12-201ENST00000429552 465 ntBASIC3.5□□□□□ -1.85
FOXA1P55317 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.5□□□□□ -1.85
FOXA1P55317 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC3.5□□□□□ -1.85
FOXA1P55317 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC3.5□□□□□ -1.85
FOXA1P55317 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC3.5□□□□□ -1.85
FOXA1P55317 AC239809.1-201ENST00000450470 217 ntBASIC3.5□□□□□ -1.85
FOXA1P55317 RNU6-599P-201ENST00000459383 107 ntBASIC3.5□□□□□ -1.85
FOXA1P55317 RNU6-1193P-201ENST00000459461 107 ntBASIC3.5□□□□□ -1.85
FOXA1P55317 AC006511.1-201ENST00000470614 315 ntBASIC3.5□□□□□ -1.85
FOXA1P55317 RN7SKP34-201ENST00000516142 244 ntBASIC3.5□□□□□ -1.85
FOXA1P55317 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC3.5□□□□□ -1.85
FOXA1P55317 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.5□□□□□ -1.85
FOXA1P55317 DUX4L52-201ENST00000549363 777 ntBASIC3.5□□□□□ -1.85
FOXA1P55317 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.5□□□□□ -1.85
FOXA1P55317 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC3.5□□□□□ -1.85
FOXA1P55317 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC3.5□□□□□ -1.85
FOXA1P55317 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC3.5□□□□□ -1.85
FOXA1P55317 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
FOXA1P55317 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
FOXA1P55317 AC090948.2-201ENST00000607363 564 ntBASIC3.5□□□□□ -1.85
FOXA1P55317 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC3.5□□□□□ -1.85
FOXA1P55317 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC3.5□□□□□ -1.85
FOXA1P55317 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
FOXA1P55317 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
FOXA1P55317 ZYXP1-201ENST00000617638 118 ntBASIC3.5□□□□□ -1.85
FOXA1P55317 RNU6-368P-201ENST00000620928 107 ntBASIC3.5□□□□□ -1.85
FOXA1P55317 AL357559.1-201ENST00000622228 274 ntBASIC3.5□□□□□ -1.85
FOXA1P55317 RNU6-538P-201ENST00000622329 107 ntBASIC3.5□□□□□ -1.85
FOXA1P55317 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.5□□□□□ -1.85
FOXA1P55317 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.5□□□□□ -1.85
FOXA1P55317 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
FOXA1P55317 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
FOXA1P55317 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC3.5□□□□□ -1.85
FOXA1P55317 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC3.5□□□□□ -1.85
FOXA1P55317 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
FOXA1P55317 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
FOXA1P55317 PPIAP31-201ENST00000405422 495 ntBASIC3.49□□□□□ -1.85
FOXA1P55317 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC3.49□□□□□ -1.85
FOXA1P55317 AC009302.1-201ENST00000417147 390 ntBASIC3.49□□□□□ -1.85
FOXA1P55317 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.49□□□□□ -1.85
FOXA1P55317 MTND2P15-201ENST00000418575 892 ntBASIC3.49□□□□□ -1.85
FOXA1P55317 AC245054.1-201ENST00000420944 258 ntBASIC3.49□□□□□ -1.85
FOXA1P55317 AC007064.3-201ENST00000422608 359 ntBASIC3.49□□□□□ -1.85
FOXA1P55317 AC106901.1-201ENST00000425086 698 ntBASIC3.49□□□□□ -1.85
FOXA1P55317 RPS6P12-201ENST00000432491 726 ntBASIC3.49□□□□□ -1.85
FOXA1P55317 BTG3P1-201ENST00000435859 716 ntBASIC3.49□□□□□ -1.85
FOXA1P55317 AL606490.8-201ENST00000441624 319 ntBASIC3.49□□□□□ -1.85
FOXA1P55317 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.49□□□□□ -1.85
FOXA1P55317 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.49□□□□□ -1.85
FOXA1P55317 NUTF2P7-201ENST00000453086 375 ntBASIC3.49□□□□□ -1.85
FOXA1P55317 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC3.49□□□□□ -1.85
FOXA1P55317 APOOP2-201ENST00000461561 539 ntBASIC3.49□□□□□ -1.85
FOXA1P55317 AL133162.1-201ENST00000463228 453 ntBASIC3.49□□□□□ -1.85
FOXA1P55317 ACTG1P13-201ENST00000486987 1043 ntBASIC3.49□□□□□ -1.85
FOXA1P55317 AL139099.1-201ENST00000497398 403 ntBASIC3.49□□□□□ -1.85
FOXA1P55317 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
FOXA1P55317 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.49□□□□□ -1.85
FOXA1P55317 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.49□□□□□ -1.85
FOXA1P55317 RN7SKP21-201ENST00000516503 220 ntBASIC3.49□□□□□ -1.85
FOXA1P55317 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.49□□□□□ -1.85
FOXA1P55317 VTA1P2-201ENST00000520205 911 ntBASIC3.49□□□□□ -1.85
FOXA1P55317 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.49□□□□□ -1.85
FOXA1P55317 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
FOXA1P55317 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC3.49□□□□□ -1.85
FOXA1P55317 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.49□□□□□ -1.85
FOXA1P55317 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC3.49□□□□□ -1.85
FOXA1P55317 AC053481.4-201ENST00000583164 216 ntBASIC3.49□□□□□ -1.85
FOXA1P55317 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.49□□□□□ -1.85
FOXA1P55317 AC006077.1-201ENST00000604746 343 ntBASIC3.49□□□□□ -1.85
FOXA1P55317 AC067838.1-201ENST00000606064 577 ntBASIC3.49□□□□□ -1.85
FOXA1P55317 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.49□□□□□ -1.85
FOXA1P55317 RNVU1-4-201ENST00000612985 164 ntBASIC3.49□□□□□ -1.85
FOXA1P55317 AC005344.1-201ENST00000613391 459 ntBASIC3.49□□□□□ -1.85
FOXA1P55317 AC004825.2-201ENST00000616634 455 ntBASIC3.49□□□□□ -1.85
FOXA1P55317 AC067852.7-201ENST00000623270 535 ntBASIC3.49□□□□□ -1.85
FOXA1P55317 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
FOXA1P55317 AC068647.1-201ENST00000489539 2265 ntBASIC3.49□□□□□ -1.85
FOXA1P55317 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
FOXA1P55317 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.48□□□□□ -1.85
FOXA1P55317 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
FOXA1P55317 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.48□□□□□ -1.85
FOXA1P55317 RN7SKP227-201ENST00000364445 330 ntBASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms