Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC5.46□□□□□ -1.54
SMARCA1P28370 RPL37P18-201ENST00000411602 243 ntBASIC5.46□□□□□ -1.54
SMARCA1P28370 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC5.46□□□□□ -1.54
SMARCA1P28370 AC016907.1-201ENST00000419483 435 ntBASIC5.46□□□□□ -1.54
SMARCA1P28370 FABP7P1-201ENST00000424004 391 ntBASIC5.46□□□□□ -1.54
SMARCA1P28370 NPM1P24-201ENST00000428039 894 ntBASIC5.46□□□□□ -1.54
SMARCA1P28370 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
SMARCA1P28370 AC092809.1-201ENST00000441469 474 ntBASIC5.46□□□□□ -1.54
SMARCA1P28370 RSL24D1P3-201ENST00000449255 495 ntBASIC5.46□□□□□ -1.54
SMARCA1P28370 AC108463.1-201ENST00000450258 347 ntBASIC5.46□□□□□ -1.54
SMARCA1P28370 ZNF736P5Y-201ENST00000451173 805 ntBASIC5.46□□□□□ -1.54
SMARCA1P28370 AC079168.2-201ENST00000453977 416 ntBASIC5.46□□□□□ -1.54
SMARCA1P28370 RPS29P22-201ENST00000472363 168 ntBASIC5.46□□□□□ -1.54
SMARCA1P28370 NIP7P2-201ENST00000485801 544 ntBASIC5.46□□□□□ -1.54
SMARCA1P28370 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
SMARCA1P28370 AC021146.8-201ENST00000507455 733 ntBASIC5.46□□□□□ -1.54
SMARCA1P28370 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC5.46□□□□□ -1.54
SMARCA1P28370 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC5.46□□□□□ -1.54
SMARCA1P28370 RNA5SP228-201ENST00000516232 133 ntBASIC5.46□□□□□ -1.54
SMARCA1P28370 PTK2-220ENST00000520151 573 ntTSL 4 BASIC5.46□□□□□ -1.54
SMARCA1P28370 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC5.46□□□□□ -1.54
SMARCA1P28370 BNIP3P1-201ENST00000547295 580 ntBASIC5.46□□□□□ -1.54
SMARCA1P28370 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC5.46□□□□□ -1.54
SMARCA1P28370 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC5.46□□□□□ -1.54
SMARCA1P28370 AC146944.4-201ENST00000602697 718 ntBASIC5.46□□□□□ -1.54
SMARCA1P28370 AL158042.1-201ENST00000605338 460 ntBASIC5.46□□□□□ -1.54
SMARCA1P28370 AL161616.1-201ENST00000611867 286 ntBASIC5.46□□□□□ -1.54
SMARCA1P28370 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.46□□□□□ -1.54
SMARCA1P28370 AC022509.4-201ENST00000621404 572 ntBASIC5.46□□□□□ -1.54
SMARCA1P28370 AC116563.2-201ENST00000624751 535 ntBASIC5.46□□□□□ -1.54
SMARCA1P28370 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
SMARCA1P28370 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC5.46□□□□□ -1.54
SMARCA1P28370 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC5.46□□□□□ -1.54
SMARCA1P28370 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
SMARCA1P28370 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
SMARCA1P28370 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC5.46□□□□□ -1.54
SMARCA1P28370 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
SMARCA1P28370 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.54
SMARCA1P28370 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC5.46□□□□□ -1.54
SMARCA1P28370 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
SMARCA1P28370 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SMARCA1P28370 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SMARCA1P28370 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SMARCA1P28370 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.45□□□□□ -1.54
SMARCA1P28370 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC5.45□□□□□ -1.54
SMARCA1P28370 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SMARCA1P28370 AC093535.2-201ENST00000624769 2326 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
SMARCA1P28370 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
SMARCA1P28370 FAM3C2-201ENST00000312214 681 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
SMARCA1P28370 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
SMARCA1P28370 RNU1-82P-201ENST00000390851 165 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 AL512430.2-201ENST00000406786 339 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 RNU6-757P-201ENST00000410334 100 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 RNU6-603P-201ENST00000411403 107 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC5.45□□□□□ -1.54
SMARCA1P28370 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC5.45□□□□□ -1.54
SMARCA1P28370 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC5.45□□□□□ -1.54
SMARCA1P28370 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC5.45□□□□□ -1.54
SMARCA1P28370 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC5.45□□□□□ -1.54
SMARCA1P28370 PAICSP7-201ENST00000419829 962 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 AC007435.1-201ENST00000421086 415 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 AC073069.1-201ENST00000428657 441 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 AL390023.1-201ENST00000428836 262 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 AC005345.1-201ENST00000431868 217 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC5.45□□□□□ -1.54
SMARCA1P28370 RPS7P5-201ENST00000441482 581 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 ANKRD30BP3-201ENST00000444850 1070 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 TPTE2P6-202ENST00000445572 1007 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 AC090142.1-201ENST00000465776 462 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC5.45□□□□□ -1.54
SMARCA1P28370 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC5.45□□□□□ -1.54
SMARCA1P28370 AC098799.3-201ENST00000506095 438 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 AC104090.1-201ENST00000506341 1171 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 AC116353.3-201ENST00000511215 249 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC5.45□□□□□ -1.54
SMARCA1P28370 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC5.45□□□□□ -1.54
SMARCA1P28370 AC107918.3-201ENST00000533272 382 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC5.45□□□□□ -1.54
SMARCA1P28370 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC5.45□□□□□ -1.54
SMARCA1P28370 AC087477.6-201ENST00000559595 843 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC5.45□□□□□ -1.54
SMARCA1P28370 BNIP3P26-201ENST00000600827 554 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 AC104785.1-201ENST00000603220 588 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 AL355816.1-201ENST00000607951 118 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 SSX9-202ENST00000608568 580 ntTSL 4 BASIC5.45□□□□□ -1.54
SMARCA1P28370 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SMARCA1P28370 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC5.45□□□□□ -1.54
SMARCA1P28370 ATE1-AS1-202ENST00000636460 506 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 SGO1P1-201ENST00000603525 1447 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 PHKBP1-201ENST00000450951 1951 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SMARCA1P28370 DCAF13P3-201ENST00000561147 1334 ntBASIC5.45□□□□□ -1.54
SMARCA1P28370 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
SMARCA1P28370 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.44□□□□□ -1.54
SMARCA1P28370 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SMARCA1P28370 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
SMARCA1P28370 AC025263.3-201ENST00000622965 1396 ntBASIC5.44□□□□□ -1.54
SMARCA1P28370 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms