Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC020891.2-201ENST00000559672 776 ntTSL 2 BASIC5.88□□□□□ -1.47
COL8A1P27658 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
COL8A1P27658 AC020914.7-201ENST00000594477 545 ntBASIC5.88□□□□□ -1.47
COL8A1P27658 AC009955.2-201ENST00000597288 542 ntBASIC5.88□□□□□ -1.47
COL8A1P27658 AL354984.3-201ENST00000604803 325 ntBASIC5.88□□□□□ -1.47
COL8A1P27658 IGHV3-29-201ENST00000604817 344 ntBASIC5.88□□□□□ -1.47
COL8A1P27658 AP001521.1-201ENST00000609150 300 ntBASIC5.88□□□□□ -1.47
COL8A1P27658 AC092902.3-201ENST00000610060 373 ntTSL 3 BASIC5.88□□□□□ -1.47
COL8A1P27658 AC243919.1-201ENST00000613086 785 ntTSL 5 BASIC5.88□□□□□ -1.47
COL8A1P27658 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC5.88□□□□□ -1.47
COL8A1P27658 AP003789.1-201ENST00000617737 605 ntBASIC5.88□□□□□ -1.47
COL8A1P27658 AC009237.17-201ENST00000618111 748 ntBASIC5.88□□□□□ -1.47
COL8A1P27658 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.88□□□□□ -1.47
COL8A1P27658 WDR75-207ENST00000631047 270 ntTSL 5 BASIC5.88□□□□□ -1.47
COL8A1P27658 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
COL8A1P27658 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
COL8A1P27658 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL8A1P27658 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
COL8A1P27658 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC5.88□□□□□ -1.47
COL8A1P27658 SNX25-202ENST00000504273 3323 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL8A1P27658 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL8A1P27658 CHCHD7-203ENST00000396723 1550 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL8A1P27658 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.88□□□□□ -1.47
COL8A1P27658 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL8A1P27658 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL8A1P27658 AC121758.1-201ENST00000557452 3942 ntTSL 2 BASIC5.88□□□□□ -1.47
COL8A1P27658 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL8A1P27658 AC090017.1-201ENST00000548612 1779 ntBASIC5.88□□□□□ -1.47
COL8A1P27658 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL8A1P27658 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
COL8A1P27658 AC091806.1-201ENST00000452690 3000 ntTSL 2 BASIC5.88□□□□□ -1.47
COL8A1P27658 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC5.88□□□□□ -1.47
COL8A1P27658 AMPD3-209ENST00000529507 3156 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
COL8A1P27658 AC122713.2-201ENST00000624942 3335 ntBASIC5.87□□□□□ -1.47
COL8A1P27658 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC5.87□□□□□ -1.47
COL8A1P27658 NFIB-221ENST00000637742 2166 ntTSL 5 BASIC5.87□□□□□ -1.47
COL8A1P27658 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL8A1P27658 LINC01360-203ENST00000440762 3871 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL8A1P27658 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.87□□□□□ -1.47
COL8A1P27658 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL8A1P27658 AC007998.4-201ENST00000612496 2533 ntBASIC5.87□□□□□ -1.47
COL8A1P27658 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL8A1P27658 ADAM2-201ENST00000265708 2672 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL8A1P27658 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL8A1P27658 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL8A1P27658 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL8A1P27658 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL8A1P27658 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL8A1P27658 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC5.87□□□□□ -1.47
COL8A1P27658 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL8A1P27658 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
COL8A1P27658 TINAG-202ENST00000370864 692 ntTSL 2 BASIC5.87□□□□□ -1.47
COL8A1P27658 RNU6-1027P-201ENST00000383998 107 ntBASIC5.87□□□□□ -1.47
COL8A1P27658 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
COL8A1P27658 RNA5SP474-201ENST00000391234 90 ntBASIC5.87□□□□□ -1.47
COL8A1P27658 AP000275.1-201ENST00000411943 390 ntBASIC5.87□□□□□ -1.47
COL8A1P27658 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC5.87□□□□□ -1.47
COL8A1P27658 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC5.87□□□□□ -1.47
COL8A1P27658 RPL23AP19-201ENST00000436229 369 ntBASIC5.87□□□□□ -1.47
COL8A1P27658 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC5.87□□□□□ -1.47
COL8A1P27658 AC005019.1-201ENST00000436455 431 ntBASIC5.87□□□□□ -1.47
COL8A1P27658 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC5.87□□□□□ -1.47
COL8A1P27658 RPS27AP15-201ENST00000447672 466 ntBASIC5.87□□□□□ -1.47
COL8A1P27658 AP1S2P1-201ENST00000457344 379 ntBASIC5.87□□□□□ -1.47
COL8A1P27658 GLRXP3-201ENST00000470810 321 ntBASIC5.87□□□□□ -1.47
COL8A1P27658 HMGB1P35-201ENST00000503360 598 ntBASIC5.87□□□□□ -1.47
COL8A1P27658 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC5.87□□□□□ -1.47
COL8A1P27658 RNU6-470P-201ENST00000515954 104 ntBASIC5.87□□□□□ -1.47
COL8A1P27658 RNU6-256P-201ENST00000516747 97 ntBASIC5.87□□□□□ -1.47
COL8A1P27658 AC107934.1-201ENST00000522215 217 ntBASIC5.87□□□□□ -1.47
COL8A1P27658 AP001922.2-201ENST00000530435 390 ntTSL 3 BASIC5.87□□□□□ -1.47
COL8A1P27658 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC5.87□□□□□ -1.47
COL8A1P27658 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC5.87□□□□□ -1.47
COL8A1P27658 SETP7-201ENST00000552169 453 ntBASIC5.87□□□□□ -1.47
COL8A1P27658 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL8A1P27658 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC5.87□□□□□ -1.47
COL8A1P27658 AL390726.5-202ENST00000564800 256 ntBASIC5.87□□□□□ -1.47
COL8A1P27658 MRPS21P9-201ENST00000571150 257 ntBASIC5.87□□□□□ -1.47
COL8A1P27658 MIR4489-201ENST00000578869 62 ntBASIC5.87□□□□□ -1.47
COL8A1P27658 RN7SL404P-201ENST00000582421 281 ntBASIC5.87□□□□□ -1.47
COL8A1P27658 MIR3672-201ENST00000584290 82 ntBASIC5.87□□□□□ -1.47
COL8A1P27658 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC5.87□□□□□ -1.47
COL8A1P27658 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC5.87□□□□□ -1.47
COL8A1P27658 AC091133.5-201ENST00000603088 301 ntBASIC5.87□□□□□ -1.47
COL8A1P27658 AC009779.6-201ENST00000603972 165 ntBASIC5.87□□□□□ -1.47
COL8A1P27658 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC5.87□□□□□ -1.47
COL8A1P27658 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC5.87□□□□□ -1.47
COL8A1P27658 AC127024.6-201ENST00000621598 424 ntBASIC5.87□□□□□ -1.47
COL8A1P27658 VEPH1-201ENST00000362010 4202 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL8A1P27658 ARHGAP12-204ENST00000375250 4914 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL8A1P27658 AC244100.3-202ENST00000617328 1721 ntTSL 2 BASIC5.87□□□□□ -1.47
COL8A1P27658 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC5.87□□□□□ -1.47
COL8A1P27658 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL8A1P27658 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL8A1P27658 AL450327.1-201ENST00000430931 2632 ntTSL 5 BASIC5.87□□□□□ -1.47
COL8A1P27658 IARS-205ENST00000443024 4341 ntTSL 5 BASIC5.87□□□□□ -1.47
COL8A1P27658 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL8A1P27658 TGFB2-202ENST00000366930 4969 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL8A1P27658 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
COL8A1P27658 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms