Protein–RNA interactions for Protein: P54729

Nub1, NEDD8 ultimate buster 1, mousemouse

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nub1P54729 Gm10013-201ENSMUST00000106074 672 ntBASIC17.8■□□□□ 0.44
Nub1P54729 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC17.8■□□□□ 0.44
Nub1P54729 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC17.8■□□□□ 0.44
Nub1P54729 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC17.8■□□□□ 0.44
Nub1P54729 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nub1P54729 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nub1P54729 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nub1P54729 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC17.8■□□□□ 0.44
Nub1P54729 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC17.8■□□□□ 0.44
Nub1P54729 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Nub1P54729 Gfra2-202ENSMUST00000227633 1480 ntBASIC17.8■□□□□ 0.44
Nub1P54729 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nub1P54729 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nub1P54729 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nub1P54729 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nub1P54729 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nub1P54729 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nub1P54729 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nub1P54729 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nub1P54729 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC17.79■□□□□ 0.44
Nub1P54729 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nub1P54729 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nub1P54729 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
Nub1P54729 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nub1P54729 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nub1P54729 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nub1P54729 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nub1P54729 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nub1P54729 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nub1P54729 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nub1P54729 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
Nub1P54729 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
Nub1P54729 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nub1P54729 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Nub1P54729 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Nub1P54729 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Nub1P54729 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nub1P54729 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nub1P54729 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC17.79■□□□□ 0.44
Nub1P54729 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nub1P54729 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nub1P54729 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nub1P54729 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nub1P54729 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nub1P54729 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nub1P54729 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Nub1P54729 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Nub1P54729 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nub1P54729 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nub1P54729 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nub1P54729 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nub1P54729 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC17.78■□□□□ 0.44
Nub1P54729 Gm44450-201ENSMUST00000199528 114 ntBASIC17.78■□□□□ 0.44
Nub1P54729 Gm18115-201ENSMUST00000221209 621 ntBASIC17.78■□□□□ 0.44
Nub1P54729 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nub1P54729 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nub1P54729 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC17.78■□□□□ 0.44
Nub1P54729 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nub1P54729 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nub1P54729 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nub1P54729 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Nub1P54729 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nub1P54729 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nub1P54729 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nub1P54729 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Nub1P54729 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nub1P54729 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nub1P54729 Gm11336-201ENSMUST00000118168 334 ntBASIC17.77■□□□□ 0.44
Nub1P54729 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Nub1P54729 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Nub1P54729 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Nub1P54729 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nub1P54729 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nub1P54729 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nub1P54729 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
Nub1P54729 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Nub1P54729 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nub1P54729 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Nub1P54729 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Nub1P54729 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Nub1P54729 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Nub1P54729 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC17.77■□□□□ 0.43
Nub1P54729 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nub1P54729 Gm8839-201ENSMUST00000121279 1645 ntBASIC17.76■□□□□ 0.43
Nub1P54729 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nub1P54729 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nub1P54729 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nub1P54729 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Nub1P54729 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Nub1P54729 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC17.76■□□□□ 0.43
Nub1P54729 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Nub1P54729 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nub1P54729 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Nub1P54729 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Nub1P54729 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nub1P54729 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nub1P54729 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nub1P54729 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nub1P54729 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nub1P54729 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms