Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 MIR331-201ENST00000362302 94 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 PGBD4P8-201ENST00000412993 562 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 AC009237.5-201ENST00000414271 501 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 XKRYP4-201ENST00000414395 483 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 TMSB10P2-201ENST00000416049 131 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 RPL7P53-201ENST00000421245 739 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 AL157831.1-201ENST00000426134 473 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 ELOCP6-201ENST00000429066 328 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 FTH1P6-201ENST00000430768 320 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 AL096829.2-201ENST00000446582 742 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 XKRYP5-201ENST00000449659 483 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 RPL7P31-201ENST00000450192 724 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 ELOCP12-201ENST00000458706 328 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 CYCSP20-201ENST00000473154 315 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 RPS29P19-201ENST00000479709 171 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 CIR1P1-201ENST00000524055 1133 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 AP000676.2-201ENST00000529711 301 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 MIR4330-201ENST00000579077 105 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 MIR4646-201ENST00000580775 63 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 AC068620.3-201ENST00000602749 560 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 AC008782.1-201ENST00000603386 430 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 AC026741.1-201ENST00000605892 482 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 AP005229.2-201ENST00000609980 697 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 AC104763.3-201ENST00000613765 618 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 MIR6826-201ENST00000617808 98 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 AC009269.6-201ENST00000621778 588 ntBASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 RNU6-1000P-201ENST00000391066 106 ntBASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 MRM2-202ENST00000407040 582 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 UBE2V1P11-201ENST00000411559 285 ntBASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 AL024507.1-201ENST00000412741 274 ntBASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 AL158825.1-201ENST00000414735 521 ntBASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 AC127526.1-201ENST00000417526 366 ntBASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 MTCO3P16-201ENST00000454456 754 ntBASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 RPL7L1P8-201ENST00000469911 741 ntBASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 AC093801.2-201ENST00000503966 1050 ntBASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 NAMPTP2-201ENST00000505629 1115 ntBASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 AC133963.2-201ENST00000513686 578 ntBASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 RN7SKP157-201ENST00000516174 282 ntBASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 IGLV2-28-201ENST00000520681 304 ntBASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 MTND1P6-201ENST00000523621 946 ntBASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 TOMM20P2-201ENST00000540082 421 ntBASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 AC084783.1-201ENST00000565846 910 ntBASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 AC106734.1-201ENST00000568646 663 ntBASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 MIR3934-201ENST00000579806 107 ntBASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 AC020910.2-201ENST00000603635 610 ntBASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 AC113403.1-201ENST00000604910 193 ntBASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 AC023510.2-201ENST00000622162 746 ntBASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.04□□□□□ -1.76
CCDC28BQ9BUN5 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms