Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS35Q96QK1 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
VPS35Q96QK1 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS35Q96QK1 SNRPGP1-201ENST00000553864 222 ntBASIC4.16□□□□□ -1.74
VPS35Q96QK1 AC007424.1-203ENST00000554613 687 ntBASIC4.16□□□□□ -1.74
VPS35Q96QK1 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS35Q96QK1 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS35Q96QK1 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS35Q96QK1 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS35Q96QK1 AC233266.2-201ENST00000567067 528 ntBASIC4.16□□□□□ -1.74
VPS35Q96QK1 HNRNPCP4-201ENST00000571636 900 ntBASIC4.16□□□□□ -1.74
VPS35Q96QK1 MTND4LP24-201ENST00000572277 291 ntBASIC4.16□□□□□ -1.74
VPS35Q96QK1 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS35Q96QK1 MIR4512-201ENST00000583257 77 ntBASIC4.16□□□□□ -1.74
VPS35Q96QK1 NF1P5-201ENST00000588287 448 ntBASIC4.16□□□□□ -1.74
VPS35Q96QK1 MIR7702-201ENST00000621931 59 ntBASIC4.16□□□□□ -1.74
VPS35Q96QK1 MIR6810-201ENST00000622701 70 ntBASIC4.16□□□□□ -1.74
VPS35Q96QK1 AL359715.5-201ENST00000623431 443 ntBASIC4.16□□□□□ -1.74
VPS35Q96QK1 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS35Q96QK1 HPVC1-201ENST00000629899 1198 ntBASIC4.16□□□□□ -1.74
VPS35Q96QK1 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
VPS35Q96QK1 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
VPS35Q96QK1 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
VPS35Q96QK1 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS35Q96QK1 MTND4P31-201ENST00000425607 1343 ntBASIC4.16□□□□□ -1.74
VPS35Q96QK1 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
VPS35Q96QK1 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
VPS35Q96QK1 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
VPS35Q96QK1 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
VPS35Q96QK1 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
VPS35Q96QK1 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
VPS35Q96QK1 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
VPS35Q96QK1 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
VPS35Q96QK1 RNU6-98P-201ENST00000384173 107 ntBASIC4.15□□□□□ -1.75
VPS35Q96QK1 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC4.15□□□□□ -1.75
VPS35Q96QK1 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS35Q96QK1 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS35Q96QK1 RPL7P29-201ENST00000437151 728 ntBASIC4.15□□□□□ -1.75
VPS35Q96QK1 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS35Q96QK1 TPTE2P6-202ENST00000445572 1007 ntBASIC4.15□□□□□ -1.75
VPS35Q96QK1 RAD23BP3-201ENST00000454157 1152 ntBASIC4.15□□□□□ -1.75
VPS35Q96QK1 AC089999.1-201ENST00000460336 374 ntBASIC4.15□□□□□ -1.75
VPS35Q96QK1 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.15□□□□□ -1.75
VPS35Q96QK1 IGKV2-36-201ENST00000519999 223 ntBASIC4.15□□□□□ -1.75
VPS35Q96QK1 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS35Q96QK1 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS35Q96QK1 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC4.15□□□□□ -1.75
VPS35Q96QK1 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4.15□□□□□ -1.75
VPS35Q96QK1 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS35Q96QK1 AC107016.1-201ENST00000550463 337 ntBASIC4.15□□□□□ -1.75
VPS35Q96QK1 AC063950.1-201ENST00000552036 308 ntBASIC4.15□□□□□ -1.75
VPS35Q96QK1 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
VPS35Q96QK1 AL590392.1-201ENST00000604960 446 ntBASIC4.15□□□□□ -1.75
VPS35Q96QK1 AL450270.1-201ENST00000606160 391 ntBASIC4.15□□□□□ -1.75
VPS35Q96QK1 AC011374.2-201ENST00000607135 526 ntBASIC4.15□□□□□ -1.75
VPS35Q96QK1 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC4.15□□□□□ -1.75
VPS35Q96QK1 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
VPS35Q96QK1 AP006248.2-201ENST00000623309 592 ntBASIC4.15□□□□□ -1.75
VPS35Q96QK1 AC138907.10-201ENST00000623708 983 ntBASIC4.15□□□□□ -1.75
VPS35Q96QK1 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.15□□□□□ -1.75
VPS35Q96QK1 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
VPS35Q96QK1 AC027287.1-201ENST00000553115 1453 ntBASIC4.15□□□□□ -1.75
VPS35Q96QK1 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
VPS35Q96QK1 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.15□□□□□ -1.75
VPS35Q96QK1 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.15□□□□□ -1.75
VPS35Q96QK1 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
VPS35Q96QK1 AL592437.2-201ENST00000421655 2434 ntBASIC4.14□□□□□ -1.75
VPS35Q96QK1 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
VPS35Q96QK1 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
VPS35Q96QK1 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.14□□□□□ -1.75
VPS35Q96QK1 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS35Q96QK1 METTL21EP-201ENST00000298105 713 ntBASIC4.14□□□□□ -1.75
VPS35Q96QK1 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS35Q96QK1 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
VPS35Q96QK1 RN7SKP33-201ENST00000410942 340 ntBASIC4.14□□□□□ -1.75
VPS35Q96QK1 AMD1P2-201ENST00000412936 992 ntBASIC4.14□□□□□ -1.75
VPS35Q96QK1 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS35Q96QK1 MORF4L1P7-201ENST00000426038 703 ntBASIC4.14□□□□□ -1.75
VPS35Q96QK1 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS35Q96QK1 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS35Q96QK1 RPL23AP89-201ENST00000439324 255 ntBASIC4.14□□□□□ -1.75
VPS35Q96QK1 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS35Q96QK1 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.14□□□□□ -1.75
VPS35Q96QK1 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS35Q96QK1 AC023050.1-201ENST00000498198 304 ntBASIC4.14□□□□□ -1.75
VPS35Q96QK1 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS35Q96QK1 AC139783.2-201ENST00000504847 1145 ntBASIC4.14□□□□□ -1.75
VPS35Q96QK1 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS35Q96QK1 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS35Q96QK1 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS35Q96QK1 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC4.14□□□□□ -1.75
VPS35Q96QK1 AC092851.1-201ENST00000535964 478 ntBASIC4.14□□□□□ -1.75
VPS35Q96QK1 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS35Q96QK1 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS35Q96QK1 AC025260.1-201ENST00000548858 430 ntBASIC4.14□□□□□ -1.75
VPS35Q96QK1 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS35Q96QK1 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS35Q96QK1 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS35Q96QK1 POLR2KP1-201ENST00000553226 168 ntBASIC4.14□□□□□ -1.75
VPS35Q96QK1 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms