Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 AL731537.2-201ENST00000561565 951 ntBASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 MIR6075-201ENST00000620782 95 ntBASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 AC083865.1-201ENST00000636634 831 ntBASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 U6.107-201ENST00000637108 79 ntBASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 AL589826.1-201ENST00000340697 249 ntBASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 MIR921-201ENST00000401133 56 ntBASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 SNORA11.1-201ENST00000408133 129 ntBASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 MFSD13B-201ENST00000420133 1290 ntBASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 AC062016.2-201ENST00000420950 676 ntBASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 FAM204CP-201ENST00000424489 642 ntBASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 AL117339.2-201ENST00000430475 180 ntBASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 RPL35AP15-201ENST00000468042 339 ntBASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 AC091959.2-201ENST00000477363 321 ntBASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 NPM1P17-201ENST00000479221 602 ntBASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 RPL23AP37-201ENST00000479658 549 ntBASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 AC012170.1-201ENST00000495139 359 ntBASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 AC008958.1-201ENST00000511047 682 ntBASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 AC005351.1-201ENST00000511152 786 ntBASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 RPL7L1P13-201ENST00000511702 739 ntBASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 TCP11X3P-202ENST00000514289 1254 ntBASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 RNA5SP446-201ENST00000515955 82 ntBASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 RNA5SP143-201ENST00000516936 115 ntBASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 MAL2-205ENST00000521048 575 ntTSL 4 BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 AL021997.2-201ENST00000615674 271 ntBASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 LARP1BP1-201ENST00000506036 1359 ntBASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC4.37□□□□□ -1.71
HDDC3Q8N4P3 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 AL672167.1-203ENST00000641299 2975 ntBASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 MIR372-201ENST00000362225 67 ntBASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 AC097374.1-203ENST00000400783 485 ntBASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 UBE2V1P15-201ENST00000407776 448 ntBASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 AC004448.2-201ENST00000422360 586 ntBASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 COX6CP15-201ENST00000426313 211 ntBASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 HMGB3P5-201ENST00000428894 612 ntBASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 FTH1P6-201ENST00000430768 320 ntBASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 MTCO3P43-201ENST00000440974 771 ntBASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 AP000926.1-201ENST00000479573 241 ntBASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 RPS4XP18-201ENST00000495480 763 ntBASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 AC090071.1-201ENST00000507713 644 ntBASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 RNA5SP49-201ENST00000516450 115 ntBASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 AC010306.1-201ENST00000523223 1117 ntBASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 MIR3944-201ENST00000581277 108 ntBASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 AL354984.3-201ENST00000604803 325 ntBASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 AL160290.3-201ENST00000604869 165 ntBASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms