Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC5.43□□□□□ -1.54
COL3A1P02461 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL3A1P02461 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL3A1P02461 RNU6-386P-201ENST00000362650 107 ntBASIC5.43□□□□□ -1.54
COL3A1P02461 RNA5SP399-201ENST00000364003 117 ntBASIC5.43□□□□□ -1.54
COL3A1P02461 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL3A1P02461 AL121978.1-201ENST00000402778 359 ntBASIC5.43□□□□□ -1.54
COL3A1P02461 SNORA11C-201ENST00000408532 129 ntBASIC5.43□□□□□ -1.54
COL3A1P02461 RNA5SP44-201ENST00000410446 133 ntBASIC5.43□□□□□ -1.54
COL3A1P02461 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC5.43□□□□□ -1.54
COL3A1P02461 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC5.43□□□□□ -1.54
COL3A1P02461 NANOGP5-201ENST00000424456 877 ntBASIC5.43□□□□□ -1.54
COL3A1P02461 OR5BE1P-201ENST00000425977 939 ntBASIC5.43□□□□□ -1.54
COL3A1P02461 AL162151.2-201ENST00000448875 158 ntBASIC5.43□□□□□ -1.54
COL3A1P02461 AC092691.2-201ENST00000461787 803 ntBASIC5.43□□□□□ -1.54
COL3A1P02461 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC5.43□□□□□ -1.54
COL3A1P02461 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.43□□□□□ -1.54
COL3A1P02461 RNU5A-7P-201ENST00000515979 116 ntBASIC5.43□□□□□ -1.54
COL3A1P02461 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC5.43□□□□□ -1.54
COL3A1P02461 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC5.43□□□□□ -1.54
COL3A1P02461 LRRC6P1-201ENST00000532188 885 ntBASIC5.43□□□□□ -1.54
COL3A1P02461 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC5.43□□□□□ -1.54
COL3A1P02461 AC093524.1-201ENST00000564266 1094 ntBASIC5.43□□□□□ -1.54
COL3A1P02461 AC022968.1-201ENST00000567372 442 ntBASIC5.43□□□□□ -1.54
COL3A1P02461 AC090666.1-201ENST00000578241 445 ntBASIC5.43□□□□□ -1.54
COL3A1P02461 AC087499.8-201ENST00000578406 226 ntBASIC5.43□□□□□ -1.54
COL3A1P02461 AC080078.2-201ENST00000603766 501 ntBASIC5.43□□□□□ -1.54
COL3A1P02461 MIR432-201ENST00000606207 94 ntBASIC5.43□□□□□ -1.54
COL3A1P02461 AC124016.2-201ENST00000610058 665 ntBASIC5.43□□□□□ -1.54
COL3A1P02461 AL121895.2-201ENST00000619558 447 ntBASIC5.43□□□□□ -1.54
COL3A1P02461 MIR7702-201ENST00000621931 59 ntBASIC5.43□□□□□ -1.54
COL3A1P02461 AC104985.3-201ENST00000623479 597 ntBASIC5.43□□□□□ -1.54
COL3A1P02461 AP005264.7-201ENST00000625003 745 ntBASIC5.43□□□□□ -1.54
COL3A1P02461 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC5.43□□□□□ -1.54
COL3A1P02461 OR5BE1P-202ENST00000641168 1176 ntBASIC5.43□□□□□ -1.54
COL3A1P02461 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL3A1P02461 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL3A1P02461 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
COL3A1P02461 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
COL3A1P02461 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC5.42□□□□□ -1.54
COL3A1P02461 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC5.42□□□□□ -1.54
COL3A1P02461 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL3A1P02461 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL3A1P02461 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL3A1P02461 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
COL3A1P02461 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC5.42□□□□□ -1.54
COL3A1P02461 RNA5SP171-201ENST00000391071 115 ntBASIC5.42□□□□□ -1.54
COL3A1P02461 PGBD4P8-201ENST00000412993 562 ntBASIC5.42□□□□□ -1.54
COL3A1P02461 LIPT1P1-201ENST00000415870 1186 ntBASIC5.42□□□□□ -1.54
COL3A1P02461 TRGV6-201ENST00000417928 299 ntBASIC5.42□□□□□ -1.54
COL3A1P02461 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC5.42□□□□□ -1.54
COL3A1P02461 VN1R25P-201ENST00000443385 738 ntBASIC5.42□□□□□ -1.54
COL3A1P02461 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC5.42□□□□□ -1.54
COL3A1P02461 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC5.42□□□□□ -1.54
COL3A1P02461 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.42□□□□□ -1.54
COL3A1P02461 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC5.42□□□□□ -1.54
COL3A1P02461 RPL23AP73-201ENST00000492507 471 ntBASIC5.42□□□□□ -1.54
COL3A1P02461 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC5.42□□□□□ -1.54
COL3A1P02461 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC5.42□□□□□ -1.54
COL3A1P02461 AC069306.1-201ENST00000507006 843 ntBASIC5.42□□□□□ -1.54
COL3A1P02461 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC5.42□□□□□ -1.54
COL3A1P02461 OR8R1P-201ENST00000543943 764 ntBASIC5.42□□□□□ -1.54
COL3A1P02461 AC034105.4-201ENST00000568304 277 ntBASIC5.42□□□□□ -1.54
COL3A1P02461 MTND6P33-201ENST00000571794 183 ntBASIC5.42□□□□□ -1.54
COL3A1P02461 MIR4429-201ENST00000580105 73 ntBASIC5.42□□□□□ -1.54
COL3A1P02461 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC5.42□□□□□ -1.54
COL3A1P02461 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC5.42□□□□□ -1.54
COL3A1P02461 SNORA35B-201ENST00000607417 129 ntBASIC5.42□□□□□ -1.54
COL3A1P02461 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC5.42□□□□□ -1.54
COL3A1P02461 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC5.42□□□□□ -1.54
COL3A1P02461 AC098679.5-201ENST00000624394 571 ntBASIC5.42□□□□□ -1.54
COL3A1P02461 AC092608.3-201ENST00000625017 386 ntBASIC5.42□□□□□ -1.54
COL3A1P02461 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC5.42□□□□□ -1.54
COL3A1P02461 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.42□□□□□ -1.54
COL3A1P02461 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL3A1P02461 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC5.41□□□□□ -1.54
COL3A1P02461 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
COL3A1P02461 AL450992.3-201ENST00000413192 568 ntBASIC5.41□□□□□ -1.54
COL3A1P02461 TRIM60P17-201ENST00000415181 719 ntBASIC5.41□□□□□ -1.54
COL3A1P02461 AC108032.1-201ENST00000416706 207 ntBASIC5.41□□□□□ -1.54
COL3A1P02461 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC5.41□□□□□ -1.54
COL3A1P02461 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC5.41□□□□□ -1.54
COL3A1P02461 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC5.41□□□□□ -1.54
COL3A1P02461 MTND1P4-201ENST00000435196 415 ntBASIC5.41□□□□□ -1.54
COL3A1P02461 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC5.41□□□□□ -1.54
COL3A1P02461 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL3A1P02461 BMI1P1-201ENST00000445879 941 ntBASIC5.41□□□□□ -1.54
COL3A1P02461 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC5.41□□□□□ -1.54
COL3A1P02461 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC5.41□□□□□ -1.54
COL3A1P02461 RPL29P14-201ENST00000495837 428 ntBASIC5.41□□□□□ -1.54
COL3A1P02461 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC5.41□□□□□ -1.54
COL3A1P02461 NAT2-202ENST00000520116 716 ntTSL 3 BASIC5.41□□□□□ -1.54
COL3A1P02461 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC5.41□□□□□ -1.54
COL3A1P02461 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC5.41□□□□□ -1.54
COL3A1P02461 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC5.41□□□□□ -1.54
COL3A1P02461 AC079171.1-201ENST00000568788 914 ntBASIC5.41□□□□□ -1.54
COL3A1P02461 AC090312.1-201ENST00000580637 348 ntBASIC5.41□□□□□ -1.54
COL3A1P02461 MIR4444-1-201ENST00000581696 74 ntBASIC5.41□□□□□ -1.54
COL3A1P02461 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC5.41□□□□□ -1.54
COL3A1P02461 MIR4444-2-201ENST00000584390 74 ntBASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms