Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC126177.5-201ENST00000549599 178 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC5.07□□□□□ -1.6
VPS4BO75351 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS4BO75351 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS4BO75351 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS4BO75351 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC5.07□□□□□ -1.6
VPS4BO75351 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS4BO75351 MIR4472-2-201ENST00000582069 67 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 MIR4697-201ENST00000582977 78 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS4BO75351 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC5.07□□□□□ -1.6
VPS4BO75351 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS4BO75351 AF131215.7-201ENST00000602443 707 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 AC133552.5-201ENST00000604266 540 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 TAS2R6P-201ENST00000605022 826 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC5.07□□□□□ -1.6
VPS4BO75351 AC008121.2-201ENST00000614647 523 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS4BO75351 AC069209.1-201ENST00000619282 651 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 AC026585.1-201ENST00000619582 524 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 PDCD6IPP1-202ENST00000622242 1064 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 AC124312.6-202ENST00000623624 418 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 CDRT1-208ENST00000630868 794 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS4BO75351 AC073869.10-201ENST00000642016 354 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS4BO75351 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS4BO75351 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
VPS4BO75351 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS4BO75351 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
VPS4BO75351 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
VPS4BO75351 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS4BO75351 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS4BO75351 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS4BO75351 AC093775.1-201ENST00000624154 1868 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
VPS4BO75351 ZNF833P-201ENST00000424938 1494 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS4BO75351 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.06□□□□□ -1.6
VPS4BO75351 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS4BO75351 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS4BO75351 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
VPS4BO75351 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS4BO75351 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
VPS4BO75351 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
VPS4BO75351 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.06□□□□□ -1.6
VPS4BO75351 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS4BO75351 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS4BO75351 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS4BO75351 RNU5D-1-201ENST00000363299 116 ntBASIC5.06□□□□□ -1.6
VPS4BO75351 SNORD116-23-201ENST00000384645 92 ntBASIC5.06□□□□□ -1.6
VPS4BO75351 RNU6-920P-201ENST00000410926 92 ntBASIC5.06□□□□□ -1.6
VPS4BO75351 TPT1P2-201ENST00000413105 503 ntBASIC5.06□□□□□ -1.6
VPS4BO75351 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS4BO75351 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.06□□□□□ -1.6
VPS4BO75351 ZNF736P2Y-201ENST00000416040 1279 ntBASIC5.06□□□□□ -1.6
VPS4BO75351 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC5.06□□□□□ -1.6
VPS4BO75351 PPIAP17-201ENST00000438507 471 ntBASIC5.06□□□□□ -1.6
VPS4BO75351 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS4BO75351 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.06□□□□□ -1.6
VPS4BO75351 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS4BO75351 AL389915.2-201ENST00000454576 441 ntBASIC5.06□□□□□ -1.6
VPS4BO75351 AC005229.2-201ENST00000456995 399 ntBASIC5.06□□□□□ -1.6
VPS4BO75351 RPS4XP12-201ENST00000461747 709 ntBASIC5.06□□□□□ -1.6
VPS4BO75351 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS4BO75351 MTND1P16-201ENST00000465177 898 ntBASIC5.06□□□□□ -1.6
VPS4BO75351 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS4BO75351 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC5.06□□□□□ -1.6
VPS4BO75351 RN7SKP283-201ENST00000517197 270 ntBASIC5.06□□□□□ -1.6
VPS4BO75351 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS4BO75351 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS4BO75351 HIGD1AP6-201ENST00000521833 279 ntBASIC5.06□□□□□ -1.6
VPS4BO75351 HIGD1AP10-201ENST00000527837 282 ntBASIC5.06□□□□□ -1.6
VPS4BO75351 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS4BO75351 AL121766.1-201ENST00000547436 487 ntBASIC5.06□□□□□ -1.6
VPS4BO75351 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
VPS4BO75351 AC007954.1-201ENST00000554198 494 ntBASIC5.06□□□□□ -1.6
VPS4BO75351 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
VPS4BO75351 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS4BO75351 MIR4330-201ENST00000579077 105 ntBASIC5.06□□□□□ -1.6
VPS4BO75351 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC5.06□□□□□ -1.6
VPS4BO75351 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS4BO75351 AC008814.1-201ENST00000603797 406 ntBASIC5.06□□□□□ -1.6
VPS4BO75351 AC000068.2-201ENST00000608816 460 ntBASIC5.06□□□□□ -1.6
VPS4BO75351 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC5.06□□□□□ -1.6
VPS4BO75351 AC234782.5-201ENST00000617723 324 ntBASIC5.06□□□□□ -1.6
VPS4BO75351 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC5.06□□□□□ -1.6
VPS4BO75351 PCMTD1P7-201ENST00000634506 357 ntBASIC5.06□□□□□ -1.6
VPS4BO75351 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.06□□□□□ -1.6
VPS4BO75351 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.06□□□□□ -1.6
VPS4BO75351 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS4BO75351 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5.06□□□□□ -1.6
VPS4BO75351 AC000374.1-201ENST00000434698 1745 ntBASIC5.06□□□□□ -1.6
VPS4BO75351 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
VPS4BO75351 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS4BO75351 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS4BO75351 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS4BO75351 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS4BO75351 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS4BO75351 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms