Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.17□□□□□ -1.74
SDC3O75056 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
SDC3O75056 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.17□□□□□ -1.74
SDC3O75056 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.17□□□□□ -1.74
SDC3O75056 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
SDC3O75056 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
SDC3O75056 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
SDC3O75056 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.16□□□□□ -1.74
SDC3O75056 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
SDC3O75056 USP9YP4-201ENST00000424401 1745 ntBASIC4.16□□□□□ -1.74
SDC3O75056 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.16□□□□□ -1.74
SDC3O75056 SNORA62.3-201ENST00000365110 153 ntBASIC4.16□□□□□ -1.74
SDC3O75056 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
SDC3O75056 ATP5F1P3-201ENST00000397213 657 ntBASIC4.16□□□□□ -1.74
SDC3O75056 HMGB1P13-201ENST00000406019 642 ntBASIC4.16□□□□□ -1.74
SDC3O75056 RPL23AP48-201ENST00000406913 488 ntBASIC4.16□□□□□ -1.74
SDC3O75056 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.16□□□□□ -1.74
SDC3O75056 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC4.16□□□□□ -1.74
SDC3O75056 AL390879.2-203ENST00000426943 1121 ntBASIC4.16□□□□□ -1.74
SDC3O75056 BX119904.1-201ENST00000432026 348 ntBASIC4.16□□□□□ -1.74
SDC3O75056 AL035458.1-201ENST00000433096 585 ntBASIC4.16□□□□□ -1.74
SDC3O75056 AL356276.2-201ENST00000435919 558 ntBASIC4.16□□□□□ -1.74
SDC3O75056 AC074367.1-201ENST00000438685 1125 ntBASIC4.16□□□□□ -1.74
SDC3O75056 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC4.16□□□□□ -1.74
SDC3O75056 RPL23AP23-201ENST00000452590 471 ntBASIC4.16□□□□□ -1.74
SDC3O75056 NPM1P17-201ENST00000479221 602 ntBASIC4.16□□□□□ -1.74
SDC3O75056 AC146944.2-203ENST00000502493 354 ntBASIC4.16□□□□□ -1.74
SDC3O75056 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
SDC3O75056 AL592156.1-201ENST00000508758 304 ntBASIC4.16□□□□□ -1.74
SDC3O75056 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.16□□□□□ -1.74
SDC3O75056 AC139495.1-202ENST00000513164 354 ntBASIC4.16□□□□□ -1.74
SDC3O75056 NDUFB4P12-201ENST00000513465 390 ntBASIC4.16□□□□□ -1.74
SDC3O75056 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.16□□□□□ -1.74
SDC3O75056 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.16□□□□□ -1.74
SDC3O75056 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC4.16□□□□□ -1.74
SDC3O75056 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC4.16□□□□□ -1.74
SDC3O75056 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.16□□□□□ -1.74
SDC3O75056 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC4.16□□□□□ -1.74
SDC3O75056 MIR1264-201ENST00000616374 69 ntBASIC4.16□□□□□ -1.74
SDC3O75056 AC006133.1-201ENST00000617106 264 ntBASIC4.16□□□□□ -1.74
SDC3O75056 AC024023.1-201ENST00000624530 922 ntBASIC4.16□□□□□ -1.74
SDC3O75056 AL356121.2-201ENST00000624715 780 ntBASIC4.16□□□□□ -1.74
SDC3O75056 AC010608.2-201ENST00000624830 470 ntBASIC4.16□□□□□ -1.74
SDC3O75056 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
SDC3O75056 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.16□□□□□ -1.74
SDC3O75056 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
SDC3O75056 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
SDC3O75056 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
SDC3O75056 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.16□□□□□ -1.74
SDC3O75056 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.16□□□□□ -1.74
SDC3O75056 MTND4P31-201ENST00000425607 1343 ntBASIC4.16□□□□□ -1.74
SDC3O75056 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
SDC3O75056 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.16□□□□□ -1.74
SDC3O75056 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
SDC3O75056 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
SDC3O75056 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
SDC3O75056 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.74
SDC3O75056 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
SDC3O75056 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
SDC3O75056 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
SDC3O75056 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.15□□□□□ -1.75
SDC3O75056 MIR670-201ENST00000390142 98 ntBASIC4.15□□□□□ -1.75
SDC3O75056 CYCSP19-201ENST00000411715 316 ntBASIC4.15□□□□□ -1.75
SDC3O75056 AC019070.1-201ENST00000415008 1024 ntBASIC4.15□□□□□ -1.75
SDC3O75056 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.15□□□□□ -1.75
SDC3O75056 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.15□□□□□ -1.75
SDC3O75056 RPL7P31-201ENST00000450192 724 ntBASIC4.15□□□□□ -1.75
SDC3O75056 RPL5P32-201ENST00000454085 879 ntBASIC4.15□□□□□ -1.75
SDC3O75056 AC034236.1-201ENST00000469891 373 ntBASIC4.15□□□□□ -1.75
SDC3O75056 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC4.15□□□□□ -1.75
SDC3O75056 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
SDC3O75056 MTND3P24-201ENST00000506306 329 ntBASIC4.15□□□□□ -1.75
SDC3O75056 AC025768.1-201ENST00000510057 267 ntBASIC4.15□□□□□ -1.75
SDC3O75056 SNORA31.13-201ENST00000516624 135 ntBASIC4.15□□□□□ -1.75
SDC3O75056 IGKV2-36-201ENST00000519999 223 ntBASIC4.15□□□□□ -1.75
SDC3O75056 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC4.15□□□□□ -1.75
SDC3O75056 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC4.15□□□□□ -1.75
SDC3O75056 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.15□□□□□ -1.75
SDC3O75056 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.15□□□□□ -1.75
SDC3O75056 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC4.15□□□□□ -1.75
SDC3O75056 AL121594.4-201ENST00000556211 1196 ntBASIC4.15□□□□□ -1.75
SDC3O75056 RN7SL703P-201ENST00000578485 302 ntBASIC4.15□□□□□ -1.75
SDC3O75056 AC053481.4-201ENST00000583164 216 ntBASIC4.15□□□□□ -1.75
SDC3O75056 HMGB2P1-201ENST00000591146 634 ntBASIC4.15□□□□□ -1.75
SDC3O75056 BNIP3P22-201ENST00000593399 556 ntBASIC4.15□□□□□ -1.75
SDC3O75056 PDCD6IPP1-202ENST00000622242 1064 ntBASIC4.15□□□□□ -1.75
SDC3O75056 AC008013.2-202ENST00000637965 364 ntBASIC4.15□□□□□ -1.75
SDC3O75056 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.15□□□□□ -1.75
SDC3O75056 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.15□□□□□ -1.75
SDC3O75056 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.15□□□□□ -1.75
SDC3O75056 AC068254.2-201ENST00000623938 3577 ntBASIC4.15□□□□□ -1.75
SDC3O75056 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.15□□□□□ -1.75
SDC3O75056 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
SDC3O75056 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
SDC3O75056 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SDC3O75056 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
SDC3O75056 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
SDC3O75056 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
SDC3O75056 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.14□□□□□ -1.75
SDC3O75056 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms