Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.08□□□□□ -1.76
CCDC28BQ9BUN5 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 AC008432.1-201ENST00000615912 1320 ntBASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 OR5P1P-201ENST00000299512 925 ntBASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 SNORA62.2-201ENST00000364672 152 ntBASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 SNORA70F-201ENST00000384142 135 ntBASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 AL109941.1-201ENST00000401925 229 ntBASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 STAT4-203ENST00000409995 709 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 UQCRBP1-201ENST00000421129 336 ntBASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 AC087650.1-201ENST00000431445 468 ntBASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 AL359265.2-201ENST00000434367 631 ntBASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 AL512326.1-201ENST00000443050 721 ntBASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 RPS27P5-201ENST00000444247 244 ntBASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 HMGN1P5-201ENST00000448591 263 ntBASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 RPL7P55-201ENST00000450522 746 ntBASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 HMGB1P5-202ENST00000451497 985 ntBASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 AC096741.1-201ENST00000472250 846 ntBASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 HAUS1P1-201ENST00000505275 832 ntBASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 MTCO3P27-201ENST00000514397 196 ntBASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 RNU5A-7P-201ENST00000515979 116 ntBASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 RN7SKP141-201ENST00000516167 338 ntBASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 RNA5SP73-201ENST00000516744 108 ntBASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 AC104662.1-201ENST00000604448 511 ntBASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 uc_338.13-201ENST00000618243 179 ntBASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 AP005019.3-201ENST00000620418 560 ntBASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 AP003476.1-201ENST00000623984 516 ntBASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC28BQ9BUN5 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 XIAPP3-201ENST00000312918 795 ntBASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AC007685.1-201ENST00000329806 452 ntBASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 RNU4-31P-201ENST00000384211 141 ntBASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 RNU4-34P-201ENST00000410431 124 ntBASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 BX664727.1-201ENST00000416024 466 ntBASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AC008072.1-201ENST00000434254 824 ntBASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 RPL12P11-201ENST00000439970 501 ntBASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 CEACAMP6-201ENST00000452007 574 ntBASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AC010326.1-201ENST00000462726 602 ntBASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 RPL12P20-201ENST00000475538 479 ntBASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AC025459.1-201ENST00000504072 156 ntBASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AC010374.2-201ENST00000512933 535 ntBASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 SNORA70.14-201ENST00000516205 110 ntBASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AC138701.1-201ENST00000524329 714 ntBASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 PCNPP1-201ENST00000552501 511 ntBASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AC115286.1-201ENST00000604298 434 ntBASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AL445222.1-201ENST00000607259 628 ntBASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AC021851.1-201ENST00000608537 1082 ntBASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AC068870.2-201ENST00000620635 389 ntBASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AL773545.4-201ENST00000637262 310 ntBASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 AL513478.4-201ENST00000641636 310 ntBASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.06□□□□□ -1.76
CCDC28BQ9BUN5 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC28BQ9BUN5 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms