Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS35Q96QK1 AL121594.4-201ENST00000556211 1196 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 AC006116.5-201ENST00000591936 559 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS35Q96QK1 AP003117.1-201ENST00000602771 554 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
VPS35Q96QK1 U6.48-201ENST00000618523 106 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
VPS35Q96QK1 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
VPS35Q96QK1 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
VPS35Q96QK1 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
VPS35Q96QK1 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
VPS35Q96QK1 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
VPS35Q96QK1 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS35Q96QK1 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
VPS35Q96QK1 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
VPS35Q96QK1 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
VPS35Q96QK1 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
VPS35Q96QK1 AC095050.2-201ENST00000510748 1458 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS35Q96QK1 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS35Q96QK1 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS35Q96QK1 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS35Q96QK1 MTND4P21-201ENST00000453886 1357 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 AL049555.1-201ENST00000562834 1933 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS35Q96QK1 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS35Q96QK1 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
VPS35Q96QK1 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
VPS35Q96QK1 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC4.17□□□□□ -1.74
VPS35Q96QK1 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS35Q96QK1 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS35Q96QK1 SNORA70.2-201ENST00000364506 135 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 MIR142-201ENST00000384835 87 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 AL049693.1-201ENST00000402760 611 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 HMGB1P13-201ENST00000406019 642 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 RNU2-17P-201ENST00000410290 190 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 RAB28P1-201ENST00000411517 641 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS35Q96QK1 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC4.17□□□□□ -1.74
VPS35Q96QK1 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS35Q96QK1 COX6CP15-201ENST00000426313 211 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.17□□□□□ -1.74
VPS35Q96QK1 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS35Q96QK1 PPIAP17-201ENST00000438507 471 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 AL353093.1-201ENST00000441292 436 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 AC097499.1-201ENST00000444277 208 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 AL500527.1-201ENST00000448532 255 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 RPL23AP23-201ENST00000452590 471 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
VPS35Q96QK1 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS35Q96QK1 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS35Q96QK1 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS35Q96QK1 DEFB109D-201ENST00000529497 240 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 CYCSP29-201ENST00000533731 318 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 AC093014.1-201ENST00000548926 724 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC4.17□□□□□ -1.74
VPS35Q96QK1 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
VPS35Q96QK1 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC4.17□□□□□ -1.74
VPS35Q96QK1 AC124068.1-201ENST00000563131 678 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 AC106785.3-201ENST00000564064 847 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 AC136624.4-201ENST00000573044 370 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.17□□□□□ -1.74
VPS35Q96QK1 AC069366.1-201ENST00000583159 838 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 AC011477.5-201ENST00000586571 259 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS35Q96QK1 OR4H6P-202ENST00000603819 340 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 ARF4P1-201ENST00000605447 541 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC4.17□□□□□ -1.74
VPS35Q96QK1 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC4.17□□□□□ -1.74
VPS35Q96QK1 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
VPS35Q96QK1 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC4.17□□□□□ -1.74
VPS35Q96QK1 CFTRP2-201ENST00000634304 199 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS35Q96QK1 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS35Q96QK1 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.17□□□□□ -1.74
VPS35Q96QK1 AL627171.1-201ENST00000618845 1308 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC4.17□□□□□ -1.74
VPS35Q96QK1 AC092162.3-201ENST00000624511 1624 ntBASIC4.17□□□□□ -1.74
VPS35Q96QK1 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.17□□□□□ -1.74
VPS35Q96QK1 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS35Q96QK1 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
VPS35Q96QK1 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
VPS35Q96QK1 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
VPS35Q96QK1 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS35Q96QK1 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC4.16□□□□□ -1.74
VPS35Q96QK1 AL590290.1-201ENST00000405336 380 ntBASIC4.16□□□□□ -1.74
VPS35Q96QK1 UBE2V1P15-201ENST00000407776 448 ntBASIC4.16□□□□□ -1.74
VPS35Q96QK1 MIR1183-201ENST00000408856 89 ntBASIC4.16□□□□□ -1.74
VPS35Q96QK1 AL450992.3-201ENST00000413192 568 ntBASIC4.16□□□□□ -1.74
VPS35Q96QK1 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS35Q96QK1 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS35Q96QK1 AC093698.1-201ENST00000423843 571 ntBASIC4.16□□□□□ -1.74
VPS35Q96QK1 YWHAEP5-201ENST00000431545 765 ntBASIC4.16□□□□□ -1.74
VPS35Q96QK1 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS35Q96QK1 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS35Q96QK1 RN7SL385P-201ENST00000468873 276 ntBASIC4.16□□□□□ -1.74
VPS35Q96QK1 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS35Q96QK1 MRPL49P2-201ENST00000521066 465 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms