Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL4A4P53420 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.01□□□□□ -1.77
COL4A4P53420 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL4A4P53420 FBXL13-208ENST00000456695 1605 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL4A4P53420 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL4A4P53420 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.01□□□□□ -1.77
COL4A4P53420 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4□□□□□ -1.77
COL4A4P53420 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4□□□□□ -1.77
COL4A4P53420 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4□□□□□ -1.77
COL4A4P53420 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC4□□□□□ -1.77
COL4A4P53420 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
COL4A4P53420 ZNF602P-201ENST00000405929 924 ntBASIC4□□□□□ -1.77
COL4A4P53420 AL031121.1-201ENST00000406553 254 ntBASIC4□□□□□ -1.77
COL4A4P53420 DBIP2-201ENST00000419076 262 ntBASIC4□□□□□ -1.77
COL4A4P53420 RPS6P14-201ENST00000425165 719 ntBASIC4□□□□□ -1.77
COL4A4P53420 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC4□□□□□ -1.77
COL4A4P53420 AC005019.1-201ENST00000436455 431 ntBASIC4□□□□□ -1.77
COL4A4P53420 AC006994.1-201ENST00000438212 839 ntBASIC4□□□□□ -1.77
COL4A4P53420 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4□□□□□ -1.77
COL4A4P53420 RPL5P16-201ENST00000471467 790 ntBASIC4□□□□□ -1.77
COL4A4P53420 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC4□□□□□ -1.77
COL4A4P53420 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4□□□□□ -1.77
COL4A4P53420 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC4□□□□□ -1.77
COL4A4P53420 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4□□□□□ -1.77
COL4A4P53420 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC4□□□□□ -1.77
COL4A4P53420 MIR4433B-201ENST00000581329 102 ntBASIC4□□□□□ -1.77
COL4A4P53420 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC4□□□□□ -1.77
COL4A4P53420 ATE1-AS1-202ENST00000636460 506 ntBASIC4□□□□□ -1.77
COL4A4P53420 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4□□□□□ -1.77
COL4A4P53420 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4□□□□□ -1.77
COL4A4P53420 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
COL4A4P53420 OSBPL9P1-201ENST00000604744 1469 ntBASIC4□□□□□ -1.77
COL4A4P53420 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL4A4P53420 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
COL4A4P53420 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
COL4A4P53420 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4□□□□□ -1.77
COL4A4P53420 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL4A4P53420 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4□□□□□ -1.77
COL4A4P53420 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4□□□□□ -1.77
COL4A4P53420 U3.26-201ENST00000391236 204 ntBASIC4□□□□□ -1.77
COL4A4P53420 AL121834.1-202ENST00000404494 277 ntBASIC4□□□□□ -1.77
COL4A4P53420 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC4□□□□□ -1.77
COL4A4P53420 SETP15-201ENST00000412724 337 ntBASIC4□□□□□ -1.77
COL4A4P53420 CBX1P3-201ENST00000413296 527 ntBASIC4□□□□□ -1.77
COL4A4P53420 AL121578.1-201ENST00000428051 892 ntBASIC4□□□□□ -1.77
COL4A4P53420 ATP5JP1-201ENST00000431631 322 ntBASIC4□□□□□ -1.77
COL4A4P53420 ELOCP18-201ENST00000434209 337 ntBASIC4□□□□□ -1.77
COL4A4P53420 AC073063.1-201ENST00000434352 607 ntBASIC4□□□□□ -1.77
COL4A4P53420 SDR42E1P3-201ENST00000438345 502 ntBASIC4□□□□□ -1.77
COL4A4P53420 VN1R25P-201ENST00000443385 738 ntBASIC4□□□□□ -1.77
COL4A4P53420 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC4□□□□□ -1.77
COL4A4P53420 VN1R40P-201ENST00000455196 941 ntBASIC4□□□□□ -1.77
COL4A4P53420 AC026784.1-201ENST00000507986 352 ntBASIC4□□□□□ -1.77
COL4A4P53420 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC4□□□□□ -1.77
COL4A4P53420 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC4□□□□□ -1.77
COL4A4P53420 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4□□□□□ -1.77
COL4A4P53420 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC4□□□□□ -1.77
COL4A4P53420 AL360157.1-201ENST00000565962 87 ntBASIC4□□□□□ -1.77
COL4A4P53420 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC4□□□□□ -1.77
COL4A4P53420 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
COL4A4P53420 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4□□□□□ -1.77
COL4A4P53420 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4□□□□□ -1.77
COL4A4P53420 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL4A4P53420 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL4A4P53420 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL4A4P53420 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.99□□□□□ -1.77
COL4A4P53420 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL4A4P53420 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.99□□□□□ -1.77
COL4A4P53420 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL4A4P53420 CDY3P-201ENST00000454543 1618 ntBASIC3.99□□□□□ -1.77
COL4A4P53420 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC3.99□□□□□ -1.77
COL4A4P53420 RNU4-35P-201ENST00000362588 141 ntBASIC3.99□□□□□ -1.77
COL4A4P53420 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC3.99□□□□□ -1.77
COL4A4P53420 RNA5SP120-201ENST00000410900 112 ntBASIC3.99□□□□□ -1.77
COL4A4P53420 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.99□□□□□ -1.77
COL4A4P53420 RPL12P46-201ENST00000436610 195 ntBASIC3.99□□□□□ -1.77
COL4A4P53420 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.99□□□□□ -1.77
COL4A4P53420 AF228730.2-201ENST00000438784 848 ntBASIC3.99□□□□□ -1.77
COL4A4P53420 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.99□□□□□ -1.77
COL4A4P53420 RWDD4P1-201ENST00000488019 565 ntBASIC3.99□□□□□ -1.77
COL4A4P53420 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.99□□□□□ -1.77
COL4A4P53420 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.99□□□□□ -1.77
COL4A4P53420 AC006960.3-201ENST00000561845 705 ntBASIC3.99□□□□□ -1.77
COL4A4P53420 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.99□□□□□ -1.77
COL4A4P53420 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.99□□□□□ -1.77
COL4A4P53420 MTATP6P25-201ENST00000574491 261 ntBASIC3.99□□□□□ -1.77
COL4A4P53420 AC144521.1-201ENST00000607148 956 ntBASIC3.99□□□□□ -1.77
COL4A4P53420 CR392039.4-201ENST00000624968 501 ntBASIC3.99□□□□□ -1.77
COL4A4P53420 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.99□□□□□ -1.77
COL4A4P53420 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC3.99□□□□□ -1.77
COL4A4P53420 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL4A4P53420 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.99□□□□□ -1.77
COL4A4P53420 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL4A4P53420 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL4A4P53420 AC092435.4-201ENST00000623012 4159 ntBASIC3.98□□□□□ -1.77
COL4A4P53420 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL4A4P53420 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
COL4A4P53420 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
COL4A4P53420 RPL7AP73-201ENST00000413490 353 ntBASIC3.98□□□□□ -1.77
COL4A4P53420 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms