Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC005042.1-201ENST00000393397 800 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 RPS3AP23-201ENST00000401762 784 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 RPS3AP2-201ENST00000407190 754 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 RPL23AP39-201ENST00000415533 405 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 RPL24P2-201ENST00000421023 475 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 ETF1P3-201ENST00000430422 1160 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 HMGB3P24-201ENST00000433260 622 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 MTCYBP6-201ENST00000441810 138 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 AL161722.1-201ENST00000446972 1032 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 PMCHL2-203ENST00000457791 237 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 NXT1P1-201ENST00000458481 316 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 RPS4XP12-201ENST00000461747 709 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 ATP5LP5-201ENST00000483050 299 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 AC096576.1-201ENST00000489014 359 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 AC109445.1-201ENST00000512356 383 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 RNA5SP271-201ENST00000516700 88 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 AC087477.6-201ENST00000559595 843 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 CYP2C60P-201ENST00000566088 139 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 MIR548AB-201ENST00000584917 84 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 AC068790.7-201ENST00000602347 528 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 AL009028.1-201ENST00000604895 802 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 AC040896.1-201ENST00000613819 479 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 RMST_5.1-201ENST00000618704 126 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 AL445264.1-201ENST00000621719 171 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 ATP5A1P1-201ENST00000454088 1321 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 CDC27P2-201ENST00000425026 1922 ntBASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 AC097063.1-201ENST00000426714 1797 ntBASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 AP005901.5-201ENST00000545779 1796 ntBASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 EEF1A1P14-201ENST00000421195 1376 ntBASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 RNU6-1251P-201ENST00000364502 107 ntBASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 SNORD65-201ENST00000391079 73 ntBASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 NPM1P40-201ENST00000412758 733 ntBASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 NRBF2P2-201ENST00000413087 861 ntBASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 AL591363.1-201ENST00000450091 483 ntBASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 AP006222.1-205ENST00000450734 457 ntBASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 RFC5P1-201ENST00000454419 874 ntBASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 IGBP1P4-201ENST00000503202 879 ntBASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 HMGB1P44-201ENST00000508597 572 ntBASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 RN7SKP70-201ENST00000516655 271 ntBASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 PMS2P3-207ENST00000529061 717 ntBASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 DUX4L52-201ENST00000549363 777 ntBASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 CASC22-201ENST00000569713 386 ntTSL 5 BASIC6.37□□□□□ -1.39
CCDC39Q9UFE4 AC005726.4-201ENST00000582858 458 ntBASIC6.37□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms