Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 SNORA11F-201ENST00000408237 128 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 MIR1179-201ENST00000408703 91 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 VTA1P1-201ENST00000414044 866 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 XKRYP4-201ENST00000414395 483 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.27□□□□□ -1.73
VPS39Q96JC1 ZNF965P-201ENST00000432501 817 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 RPS7P5-201ENST00000441482 581 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 XKRYP5-201ENST00000449659 483 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 SBDSP1-204ENST00000453858 737 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 AC146507.1-201ENST00000468335 354 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 RPS6P4-201ENST00000494693 758 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 AL035404.1-201ENST00000497982 568 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.27□□□□□ -1.73
VPS39Q96JC1 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
VPS39Q96JC1 PTGES3P3-201ENST00000511479 482 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 RNA5SP309-201ENST00000516670 106 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 RN7SKP283-201ENST00000517197 270 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 AC090281.1-201ENST00000523019 276 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.27□□□□□ -1.73
VPS39Q96JC1 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC4.27□□□□□ -1.73
VPS39Q96JC1 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VPS39Q96JC1 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC4.27□□□□□ -1.73
VPS39Q96JC1 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC4.27□□□□□ -1.73
VPS39Q96JC1 NTAN1P1-201ENST00000603150 646 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 AC079610.2-201ENST00000604818 690 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC4.27□□□□□ -1.73
VPS39Q96JC1 MKKS-203ENST00000609375 882 ntTSL 2 BASIC4.27□□□□□ -1.73
VPS39Q96JC1 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VPS39Q96JC1 AC073429.2-201ENST00000569694 1444 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 MARK2P15-201ENST00000432204 2186 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
VPS39Q96JC1 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
VPS39Q96JC1 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS39Q96JC1 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS39Q96JC1 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.26□□□□□ -1.73
VPS39Q96JC1 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
VPS39Q96JC1 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.26□□□□□ -1.73
VPS39Q96JC1 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.26□□□□□ -1.73
VPS39Q96JC1 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
VPS39Q96JC1 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.26□□□□□ -1.73
VPS39Q96JC1 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.26□□□□□ -1.73
VPS39Q96JC1 AC095050.2-201ENST00000510748 1458 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS39Q96JC1 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS39Q96JC1 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS39Q96JC1 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
VPS39Q96JC1 AL589826.1-201ENST00000340697 249 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 RNA5SP388-201ENST00000362584 119 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 MIR93-201ENST00000385024 80 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 MIR937-201ENST00000401271 86 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 RNU2-17P-201ENST00000410290 190 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC4.26□□□□□ -1.73
VPS39Q96JC1 AC016769.2-201ENST00000414815 475 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 AC119751.6-201ENST00000416712 186 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 NUP35P2-201ENST00000416748 943 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS39Q96JC1 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS39Q96JC1 AL356387.2-201ENST00000422272 243 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS39Q96JC1 AL138878.2-201ENST00000440581 1241 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 AL512326.1-201ENST00000443050 721 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS39Q96JC1 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS39Q96JC1 RN7SL585P-201ENST00000470538 280 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 RPS29P22-201ENST00000472363 168 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 AC104689.1-201ENST00000473356 768 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 TRBV8-2-201ENST00000475637 270 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS39Q96JC1 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC4.26□□□□□ -1.73
VPS39Q96JC1 UBTFL9-201ENST00000534504 1148 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS39Q96JC1 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS39Q96JC1 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC4.26□□□□□ -1.73
VPS39Q96JC1 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS39Q96JC1 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS39Q96JC1 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS39Q96JC1 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
VPS39Q96JC1 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS39Q96JC1 AC113403.1-201ENST00000604910 193 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 AL049634.3-201ENST00000604968 457 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 AC012467.1-201ENST00000607740 256 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 AC112503.1-201ENST00000608436 391 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 AC026368.1-201ENST00000614934 690 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 AC121761.2-201ENST00000617300 689 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 AL645927.2-201ENST00000618350 349 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 AC008785.1-201ENST00000624475 456 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.26□□□□□ -1.73
VPS39Q96JC1 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.26□□□□□ -1.73
VPS39Q96JC1 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC4.26□□□□□ -1.73
VPS39Q96JC1 AC138649.5-201ENST00000637456 137 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 AC008725.1-201ENST00000605123 2263 ntBASIC4.26□□□□□ -1.73
VPS39Q96JC1 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS39Q96JC1 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS39Q96JC1 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.25□□□□□ -1.73
VPS39Q96JC1 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC4.25□□□□□ -1.73
VPS39Q96JC1 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.25□□□□□ -1.73
VPS39Q96JC1 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
VPS39Q96JC1 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.25□□□□□ -1.73
VPS39Q96JC1 OR52E6-202ENST00000379946 954 ntBASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms