Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC88AQ3V6T2 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC88AQ3V6T2 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
CCDC88AQ3V6T2 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
CCDC88AQ3V6T2 AL034403.1-201ENST00000399414 885 ntBASIC4.63□□□□□ -1.67
CCDC88AQ3V6T2 RPL7P44-201ENST00000424827 742 ntBASIC4.63□□□□□ -1.67
CCDC88AQ3V6T2 CYCSP4-201ENST00000429682 331 ntBASIC4.63□□□□□ -1.67
CCDC88AQ3V6T2 AL035458.1-201ENST00000433096 585 ntBASIC4.63□□□□□ -1.67
CCDC88AQ3V6T2 HLA-N-201ENST00000437516 135 ntBASIC4.63□□□□□ -1.67
CCDC88AQ3V6T2 RPS3AP14-201ENST00000483907 780 ntBASIC4.63□□□□□ -1.67
CCDC88AQ3V6T2 RPL7P23-201ENST00000493874 747 ntBASIC4.63□□□□□ -1.67
CCDC88AQ3V6T2 AC116312.1-201ENST00000606841 314 ntBASIC4.63□□□□□ -1.67
CCDC88AQ3V6T2 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC4.63□□□□□ -1.67
CCDC88AQ3V6T2 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC4.63□□□□□ -1.67
CCDC88AQ3V6T2 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC88AQ3V6T2 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC88AQ3V6T2 MIR199A2-201ENST00000385289 110 ntBASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 CBX1P3-201ENST00000413296 527 ntBASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 HSFY4P-201ENST00000415994 1181 ntBASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 PRELID3BP6-201ENST00000503839 571 ntBASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 NACA-211ENST00000548563 827 ntTSL 5 BASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 MIR5186-201ENST00000577504 120 ntBASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 OR7A8P-201ENST00000595427 913 ntBASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 OR4K6P-201ENST00000416478 897 ntBASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 AC096644.3-201ENST00000416788 338 ntBASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 AC025445.1-201ENST00000502728 300 ntBASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 AC115621.1-201ENST00000604653 858 ntBASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 AC026368.1-201ENST00000614934 690 ntBASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC4.62□□□□□ -1.67
CCDC88AQ3V6T2 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 RNU4-35P-201ENST00000362588 141 ntBASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 AC005019.1-201ENST00000436455 431 ntBASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 AC092641.1-201ENST00000440229 772 ntBASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 RN7SL807P-201ENST00000470923 297 ntBASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 MEG8-215ENST00000555354 469 ntTSL 3 BASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 CFL2-206ENST00000556161 546 ntTSL 4 BASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 CYP4A43P-201ENST00000568156 121 ntBASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 AL513477.2-201ENST00000607858 568 ntBASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC88AQ3V6T2 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 SNORA48.5-201ENST00000391143 135 ntBASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 AC073063.1-201ENST00000434352 607 ntBASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 TRAV15-201ENST00000556680 249 ntBASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 AL133247.2-201ENST00000603236 482 ntBASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 AC073869.7-201ENST00000640874 297 ntBASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 AC019072.1-201ENST00000604535 1551 ntBASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 AC139426.3-201ENST00000605648 2059 ntBASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 BTF3P5-201ENST00000457252 467 ntBASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 RN7SL585P-201ENST00000470538 280 ntBASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 TAF8-207ENST00000482432 556 ntTSL 2 BASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 AC074276.2-201ENST00000619891 348 ntBASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 133.6 ms