Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC134882.1-201ENST00000603738 1676 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 CASC19-204ENST00000641001 2055 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 MAPK10-286ENST00000641208 8747 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 AC120338.1-201ENST00000625074 1541 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 AC119744.1-201ENST00000454746 1715 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 AC025263.3-201ENST00000622965 1396 ntBASIC4.65□□□□□ -1.66
COL28A1Q2UY09 SCN1A-220ENST00000641603 12506 ntBASIC4.65□□□□□ -1.66
COL28A1Q2UY09 AL592148.3-201ENST00000608771 2646 ntBASIC4.65□□□□□ -1.66
COL28A1Q2UY09 AL049737.1-201ENST00000413920 1403 ntBASIC4.65□□□□□ -1.66
COL28A1Q2UY09 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
COL28A1Q2UY09 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.65□□□□□ -1.66
COL28A1Q2UY09 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.65□□□□□ -1.66
COL28A1Q2UY09 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
COL28A1Q2UY09 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 SNORA62.3-201ENST00000365110 153 ntBASIC4.65□□□□□ -1.67
COL28A1Q2UY09 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 SNORA2.3-201ENST00000383920 135 ntBASIC4.65□□□□□ -1.67
COL28A1Q2UY09 RNU6-224P-201ENST00000384055 107 ntBASIC4.65□□□□□ -1.67
COL28A1Q2UY09 AC093719.1-202ENST00000392735 373 ntBASIC4.65□□□□□ -1.67
COL28A1Q2UY09 AL592310.1-201ENST00000414330 671 ntBASIC4.65□□□□□ -1.67
COL28A1Q2UY09 OR2B7P-201ENST00000429302 934 ntBASIC4.65□□□□□ -1.67
COL28A1Q2UY09 RPL23AP83-201ENST00000434984 473 ntBASIC4.65□□□□□ -1.67
COL28A1Q2UY09 AC234064.1-201ENST00000436312 247 ntBASIC4.65□□□□□ -1.67
COL28A1Q2UY09 ELOCP11-201ENST00000436690 332 ntBASIC4.65□□□□□ -1.67
COL28A1Q2UY09 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 ELOCP16-201ENST00000444494 332 ntBASIC4.65□□□□□ -1.67
COL28A1Q2UY09 AL354714.3-201ENST00000447284 493 ntBASIC4.65□□□□□ -1.67
COL28A1Q2UY09 IGHV5-78-201ENST00000450948 295 ntBASIC4.65□□□□□ -1.67
COL28A1Q2UY09 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 XACT-201ENST00000468762 497 ntTSL 5 BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 NIFKP7-201ENST00000503365 834 ntBASIC4.65□□□□□ -1.67
COL28A1Q2UY09 AC073358.1-201ENST00000505671 684 ntBASIC4.65□□□□□ -1.67
COL28A1Q2UY09 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 RNU6-416P-201ENST00000516265 103 ntBASIC4.65□□□□□ -1.67
COL28A1Q2UY09 snoZ278.1-201ENST00000517059 112 ntBASIC4.65□□□□□ -1.67
COL28A1Q2UY09 RN7SKP283-201ENST00000517197 270 ntBASIC4.65□□□□□ -1.67
COL28A1Q2UY09 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 AC011477.5-201ENST00000586571 259 ntBASIC4.65□□□□□ -1.67
COL28A1Q2UY09 AC022916.3-201ENST00000592961 742 ntBASIC4.65□□□□□ -1.67
COL28A1Q2UY09 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 AL035411.2-201ENST00000604022 421 ntBASIC4.65□□□□□ -1.67
COL28A1Q2UY09 ARF4P1-201ENST00000605447 541 ntBASIC4.65□□□□□ -1.67
COL28A1Q2UY09 AC100847.1-201ENST00000611316 481 ntBASIC4.65□□□□□ -1.67
COL28A1Q2UY09 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 AL356863.1-201ENST00000623378 1080 ntBASIC4.65□□□□□ -1.67
COL28A1Q2UY09 AP001002.2-201ENST00000625137 386 ntBASIC4.65□□□□□ -1.67
COL28A1Q2UY09 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 AP000542.2-201ENST00000623199 6179 ntBASIC4.65□□□□□ -1.67
COL28A1Q2UY09 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
COL28A1Q2UY09 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AC063976.2-201ENST00000425667 3556 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AL512646.1-201ENST00000269395 1077 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 MTCO2P31-201ENST00000402702 684 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AC234782.4-201ENST00000417646 1048 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 RPS12P10-201ENST00000427031 377 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 COX6CP13-201ENST00000428703 226 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 RPL7P4-203ENST00000430239 730 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 BX323845.1-201ENST00000432417 179 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 ZNF886P-201ENST00000450781 723 ntBASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms