Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
MSH6P52701 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
MSH6P52701 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC5.29□□□□□ -1.56
MSH6P52701 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
MSH6P52701 RNU1-15P-201ENST00000353977 144 ntBASIC5.29□□□□□ -1.56
MSH6P52701 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC5.29□□□□□ -1.56
MSH6P52701 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC5.29□□□□□ -1.56
MSH6P52701 AC005300.1-201ENST00000428401 373 ntBASIC5.29□□□□□ -1.56
MSH6P52701 AL512649.1-201ENST00000428997 581 ntBASIC5.29□□□□□ -1.56
MSH6P52701 DYNLL1P7-201ENST00000429273 258 ntBASIC5.29□□□□□ -1.56
MSH6P52701 RANP8-201ENST00000444720 713 ntBASIC5.29□□□□□ -1.56
MSH6P52701 RPL21P10-201ENST00000463521 490 ntBASIC5.29□□□□□ -1.56
MSH6P52701 RPL21P6-201ENST00000479171 504 ntBASIC5.29□□□□□ -1.56
MSH6P52701 AGGF1P3-201ENST00000493675 1213 ntBASIC5.29□□□□□ -1.56
MSH6P52701 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
MSH6P52701 TCP11X3P-202ENST00000514289 1254 ntBASIC5.29□□□□□ -1.56
MSH6P52701 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC5.29□□□□□ -1.56
MSH6P52701 NACA-211ENST00000548563 827 ntTSL 5 BASIC5.29□□□□□ -1.56
MSH6P52701 AL390334.1-201ENST00000556395 450 ntBASIC5.29□□□□□ -1.56
MSH6P52701 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC5.29□□□□□ -1.56
MSH6P52701 AC010591.1-201ENST00000603941 649 ntBASIC5.29□□□□□ -1.56
MSH6P52701 AL137849.1-201ENST00000604767 169 ntBASIC5.29□□□□□ -1.56
MSH6P52701 SMCR2_2.1-201ENST00000619783 161 ntBASIC5.29□□□□□ -1.56
MSH6P52701 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC5.29□□□□□ -1.56
MSH6P52701 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC5.29□□□□□ -1.56
MSH6P52701 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
MSH6P52701 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
MSH6P52701 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.29□□□□□ -1.56
MSH6P52701 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC5.29□□□□□ -1.56
MSH6P52701 DLD-204ENST00000437604 1859 ntTSL 2 BASIC5.29□□□□□ -1.56
MSH6P52701 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC5.29□□□□□ -1.56
MSH6P52701 AL365440.1-201ENST00000436135 2167 ntBASIC5.29□□□□□ -1.56
MSH6P52701 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
MSH6P52701 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
MSH6P52701 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
MSH6P52701 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC5.29□□□□□ -1.56
MSH6P52701 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
MSH6P52701 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC5.29□□□□□ -1.56
MSH6P52701 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC5.29□□□□□ -1.56
MSH6P52701 KATNBL1P4-201ENST00000503545 918 ntBASIC5.29□□□□□ -1.56
MSH6P52701 RNU6-964P-201ENST00000516524 69 ntBASIC5.29□□□□□ -1.56
MSH6P52701 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC5.29□□□□□ -1.56
MSH6P52701 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
MSH6P52701 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC5.29□□□□□ -1.56
MSH6P52701 AP005205.1-201ENST00000563503 508 ntBASIC5.29□□□□□ -1.56
MSH6P52701 AC079171.1-201ENST00000568788 914 ntBASIC5.29□□□□□ -1.56
MSH6P52701 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC5.29□□□□□ -1.56
MSH6P52701 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC5.29□□□□□ -1.56
MSH6P52701 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
MSH6P52701 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC5.28□□□□□ -1.56
MSH6P52701 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
MSH6P52701 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
MSH6P52701 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC5.28□□□□□ -1.56
MSH6P52701 BDP1P-201ENST00000582658 1990 ntBASIC5.28□□□□□ -1.56
MSH6P52701 MTCO1P7-201ENST00000419523 1542 ntBASIC5.28□□□□□ -1.56
MSH6P52701 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
MSH6P52701 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
MSH6P52701 Z95327.2-201ENST00000414579 1873 ntBASIC5.28□□□□□ -1.56
MSH6P52701 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
MSH6P52701 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
MSH6P52701 OR6K3-202ENST00000368146 996 ntBASIC5.28□□□□□ -1.56
MSH6P52701 AC005019.1-201ENST00000436455 431 ntBASIC5.28□□□□□ -1.56
MSH6P52701 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
MSH6P52701 AL831737.1-201ENST00000441288 271 ntBASIC5.28□□□□□ -1.56
MSH6P52701 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC5.28□□□□□ -1.56
MSH6P52701 AC103843.2-201ENST00000530523 682 ntBASIC5.28□□□□□ -1.56
MSH6P52701 AC011270.1-201ENST00000558606 583 ntBASIC5.28□□□□□ -1.56
MSH6P52701 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.27□□□□□ -1.57
MSH6P52701 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC5.27□□□□□ -1.57
MSH6P52701 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC5.27□□□□□ -1.57
MSH6P52701 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
MSH6P52701 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
MSH6P52701 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC5.27□□□□□ -1.57
MSH6P52701 GOLGA5P1-201ENST00000507317 980 ntBASIC5.27□□□□□ -1.57
MSH6P52701 RNU2-27P-201ENST00000516185 142 ntBASIC5.27□□□□□ -1.57
MSH6P52701 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC5.27□□□□□ -1.57
MSH6P52701 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC5.27□□□□□ -1.57
MSH6P52701 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC5.27□□□□□ -1.57
MSH6P52701 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC5.27□□□□□ -1.57
MSH6P52701 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC5.27□□□□□ -1.57
MSH6P52701 AC079298.2-201ENST00000623885 459 ntBASIC5.27□□□□□ -1.57
MSH6P52701 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC5.27□□□□□ -1.57
MSH6P52701 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
MSH6P52701 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
MSH6P52701 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC5.26□□□□□ -1.57
MSH6P52701 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
MSH6P52701 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
MSH6P52701 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC5.26□□□□□ -1.57
MSH6P52701 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
MSH6P52701 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
MSH6P52701 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
MSH6P52701 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
MSH6P52701 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC5.26□□□□□ -1.57
MSH6P52701 SNORD9-201ENST00000362566 104 ntBASIC5.26□□□□□ -1.57
MSH6P52701 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC5.26□□□□□ -1.57
MSH6P52701 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC5.26□□□□□ -1.57
MSH6P52701 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.26□□□□□ -1.57
MSH6P52701 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC5.26□□□□□ -1.57
MSH6P52701 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
MSH6P52701 AC116158.1-201ENST00000560231 2129 ntBASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms