Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXA9P31269 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXA9P31269 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXA9P31269 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC4.19□□□□□ -1.74
HOXA9P31269 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXA9P31269 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXA9P31269 AC090953.1-201ENST00000604305 1092 ntBASIC4.19□□□□□ -1.74
HOXA9P31269 AL451044.1-201ENST00000604867 238 ntBASIC4.19□□□□□ -1.74
HOXA9P31269 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXA9P31269 AC138907.10-201ENST00000623708 983 ntBASIC4.19□□□□□ -1.74
HOXA9P31269 AC004777.1-201ENST00000624317 287 ntBASIC4.19□□□□□ -1.74
HOXA9P31269 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXA9P31269 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXA9P31269 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXA9P31269 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC4.19□□□□□ -1.74
HOXA9P31269 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC4.18□□□□□ -1.74
HOXA9P31269 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
HOXA9P31269 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
HOXA9P31269 MTND4P26-201ENST00000415971 1359 ntBASIC4.18□□□□□ -1.74
HOXA9P31269 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HOXA9P31269 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HOXA9P31269 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
HOXA9P31269 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC4.18□□□□□ -1.74
HOXA9P31269 MAPK10-253ENST00000641010 4072 ntBASIC4.18□□□□□ -1.74
HOXA9P31269 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
HOXA9P31269 RNA5SP119-201ENST00000362715 117 ntBASIC4.18□□□□□ -1.74
HOXA9P31269 SNORD35B-201ENST00000363660 87 ntBASIC4.18□□□□□ -1.74
HOXA9P31269 RNA5SP97-201ENST00000365006 84 ntBASIC4.18□□□□□ -1.74
HOXA9P31269 MIR93-201ENST00000385024 80 ntBASIC4.18□□□□□ -1.74
HOXA9P31269 ZNF602P-201ENST00000405929 924 ntBASIC4.18□□□□□ -1.74
HOXA9P31269 SNORA3.3-201ENST00000408712 125 ntBASIC4.18□□□□□ -1.74
HOXA9P31269 UBE2V2P1-201ENST00000434717 398 ntBASIC4.18□□□□□ -1.74
HOXA9P31269 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HOXA9P31269 HMGB3P14-201ENST00000494195 599 ntBASIC4.18□□□□□ -1.74
HOXA9P31269 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXA9P31269 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXA9P31269 AC018797.3-201ENST00000513388 1241 ntBASIC4.18□□□□□ -1.74
HOXA9P31269 RNA5SP179-201ENST00000517284 121 ntBASIC4.18□□□□□ -1.74
HOXA9P31269 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXA9P31269 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC4.18□□□□□ -1.74
HOXA9P31269 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.18□□□□□ -1.74
HOXA9P31269 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.18□□□□□ -1.74
HOXA9P31269 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC4.18□□□□□ -1.74
HOXA9P31269 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.18□□□□□ -1.74
HOXA9P31269 SNX6P1-201ENST00000601728 1224 ntBASIC4.18□□□□□ -1.74
HOXA9P31269 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HOXA9P31269 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC4.18□□□□□ -1.74
HOXA9P31269 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HOXA9P31269 AC005344.1-201ENST00000613391 459 ntBASIC4.18□□□□□ -1.74
HOXA9P31269 AC090246.1-201ENST00000616499 426 ntBASIC4.18□□□□□ -1.74
HOXA9P31269 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HOXA9P31269 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.18□□□□□ -1.74
HOXA9P31269 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HOXA9P31269 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC4.18□□□□□ -1.74
HOXA9P31269 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HOXA9P31269 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.18□□□□□ -1.74
HOXA9P31269 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
HOXA9P31269 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.18□□□□□ -1.74
HOXA9P31269 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HOXA9P31269 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
HOXA9P31269 AP004289.2-201ENST00000444413 1457 ntBASIC4.18□□□□□ -1.74
HOXA9P31269 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
HOXA9P31269 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
HOXA9P31269 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
HOXA9P31269 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HOXA9P31269 RN7SKP44-201ENST00000363602 316 ntBASIC4.17□□□□□ -1.74
HOXA9P31269 SNORA73.2-201ENST00000364946 201 ntBASIC4.17□□□□□ -1.74
HOXA9P31269 RHOT1P2-201ENST00000366423 333 ntBASIC4.17□□□□□ -1.74
HOXA9P31269 AL133412.1-201ENST00000380194 2992 ntBASIC4.17□□□□□ -1.74
HOXA9P31269 PGBD4P8-201ENST00000412993 562 ntBASIC4.17□□□□□ -1.74
HOXA9P31269 Z97055.1-201ENST00000419730 712 ntBASIC4.17□□□□□ -1.74
HOXA9P31269 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXA9P31269 AC069157.1-201ENST00000421749 137 ntBASIC4.17□□□□□ -1.74
HOXA9P31269 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.17□□□□□ -1.74
HOXA9P31269 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXA9P31269 CYCSP53-201ENST00000455540 265 ntBASIC4.17□□□□□ -1.74
HOXA9P31269 HNRNPDLP3-201ENST00000456745 380 ntBASIC4.17□□□□□ -1.74
HOXA9P31269 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXA9P31269 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC4.17□□□□□ -1.74
HOXA9P31269 CCNHP1-201ENST00000513311 678 ntBASIC4.17□□□□□ -1.74
HOXA9P31269 RNA5SP154-201ENST00000516193 111 ntBASIC4.17□□□□□ -1.74
HOXA9P31269 MYL12AP1-201ENST00000518490 515 ntBASIC4.17□□□□□ -1.74
HOXA9P31269 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXA9P31269 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC4.17□□□□□ -1.74
HOXA9P31269 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXA9P31269 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.17□□□□□ -1.74
HOXA9P31269 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC4.17□□□□□ -1.74
HOXA9P31269 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC4.17□□□□□ -1.74
HOXA9P31269 AC087499.8-201ENST00000578406 226 ntBASIC4.17□□□□□ -1.74
HOXA9P31269 AC015726.1-201ENST00000602353 681 ntBASIC4.17□□□□□ -1.74
HOXA9P31269 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXA9P31269 AC091167.4-201ENST00000605079 184 ntBASIC4.17□□□□□ -1.74
HOXA9P31269 GMCL1P2-201ENST00000605230 823 ntBASIC4.17□□□□□ -1.74
HOXA9P31269 AC064801.1-201ENST00000612025 407 ntBASIC4.17□□□□□ -1.74
HOXA9P31269 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXA9P31269 AC026368.1-201ENST00000614934 690 ntBASIC4.17□□□□□ -1.74
HOXA9P31269 AF001550.2-201ENST00000636643 217 ntBASIC4.17□□□□□ -1.74
HOXA9P31269 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
HOXA9P31269 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
HOXA9P31269 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms