Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 MTND4P5-201ENST00000435821 1374 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 CASC19-204ENST00000641001 2055 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AL353743.4-201ENST00000422653 1547 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 ZNF833P-201ENST00000424938 1494 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 Y_RNA.194-201ENST00000363985 102 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 SNORA4.1-201ENST00000364263 144 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 SNORA56-201ENST00000383966 129 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 RNU6-1151P-201ENST00000384684 107 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 ZNF736P2Y-201ENST00000416040 1279 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 KCTD10P1-201ENST00000434203 625 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 NPM1P33-201ENST00000438918 872 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 OR7E125P-201ENST00000443450 846 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AL354714.3-201ENST00000447284 493 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 RPL37P3-201ENST00000456825 293 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 RN7SL319P-201ENST00000480656 221 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 RN7SL814P-201ENST00000487715 300 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AC069304.1-201ENST00000491593 704 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 DSTNP2-201ENST00000504533 515 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 ATP1B1P1-201ENST00000509767 915 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AL671862.1-201ENST00000515851 349 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 TBCA-206ENST00000518338 551 ntTSL 2 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 NDUFA5P2-201ENST00000519723 344 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AF279873.1-201ENST00000523393 313 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 HIGD1AP5-201ENST00000529959 259 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AC138915.2-201ENST00000569776 97 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AC119751.7-201ENST00000600494 245 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AC087283.1-201ENST00000604029 1074 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AL031320.1-201ENST00000604177 357 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AC091488.1-201ENST00000604239 660 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AP005432.2-201ENST00000608162 586 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 AC116563.2-201ENST00000624751 535 ntBASIC5.28□□□□□ -1.56
TDP1Q9NUW8 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.28□□□□□ -1.56
TDP1Q9NUW8 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 AC107982.1-201ENST00000507171 1300 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 RNU6-492P-201ENST00000363035 104 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 MT-TH-201ENST00000387441 69 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 AL355379.1-201ENST00000405542 640 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 RNU2-65P-201ENST00000410162 185 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 PIGPP2-201ENST00000411569 458 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms