Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC5.98□□□□□ -1.45
CHMP4AQ9BY43 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC5.98□□□□□ -1.45
CHMP4AQ9BY43 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC5.98□□□□□ -1.45
CHMP4AQ9BY43 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC5.98□□□□□ -1.45
CHMP4AQ9BY43 MFSD8-216ENST00000641147 4009 ntBASIC5.98□□□□□ -1.45
CHMP4AQ9BY43 AC010928.1-201ENST00000592477 1447 ntBASIC5.98□□□□□ -1.45
CHMP4AQ9BY43 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 RNA5SP189-201ENST00000364920 115 ntBASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 RNU6-444P-201ENST00000383988 108 ntBASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 AMMECR1LP1-201ENST00000415152 841 ntBASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 RPS27AP12-201ENST00000429552 465 ntBASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 AC108463.1-201ENST00000450258 347 ntBASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 RHEBP2-201ENST00000450289 600 ntBASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 RNA5SP103-201ENST00000459503 118 ntBASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 RPL23AP37-201ENST00000479658 549 ntBASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 KRTAP5-14P-201ENST00000502328 121 ntBASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 AC020593.1-201ENST00000507399 299 ntBASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 AC121161.1-201ENST00000510606 652 ntBASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 OSBPL9P2-201ENST00000526582 1228 ntBASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 AP003049.1-201ENST00000529418 457 ntBASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 AC087477.6-201ENST00000559595 843 ntBASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 MIR4504-201ENST00000577413 92 ntBASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 AC105227.2-201ENST00000615075 605 ntBASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 AP005019.3-201ENST00000620418 560 ntBASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 AC135352.1-201ENST00000506173 1418 ntBASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.97□□□□□ -1.45
CHMP4AQ9BY43 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
CHMP4AQ9BY43 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC5.96□□□□□ -1.45
CHMP4AQ9BY43 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC5.96□□□□□ -1.45
CHMP4AQ9BY43 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.45
CHMP4AQ9BY43 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.45
CHMP4AQ9BY43 MTND4P8-201ENST00000514997 1362 ntBASIC5.96□□□□□ -1.45
CHMP4AQ9BY43 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 AC115285.1-201ENST00000424879 736 ntBASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 CNOT7P1-201ENST00000429006 852 ntBASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 H2AFZP6-201ENST00000444403 394 ntBASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 AL929288.2-201ENST00000446368 407 ntBASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 CYCSP34-201ENST00000458172 304 ntBASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 RPL12P20-201ENST00000475538 479 ntBASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 GAPDHP36-201ENST00000480688 918 ntBASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 RPL23AP72-201ENST00000492447 435 ntBASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 AC078918.1-201ENST00000498515 228 ntBASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 MTND4LP2-201ENST00000502312 285 ntBASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 AK3P4-201ENST00000504283 583 ntBASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 AC005921.1-201ENST00000510589 286 ntBASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 KRT19P6-201ENST00000510983 209 ntBASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 MTND2P31-201ENST00000512602 616 ntBASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 MTCO1P30-201ENST00000515244 580 ntBASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 CASP1-212ENST00000531166 300 ntTSL 5 BASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 AC078899.5-201ENST00000612475 178 ntBASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 AC026368.1-201ENST00000614934 690 ntBASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.46
CHMP4AQ9BY43 AL592148.3-201ENST00000608771 2646 ntBASIC5.95□□□□□ -1.46
CHMP4AQ9BY43 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC5.95□□□□□ -1.46
CHMP4AQ9BY43 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
CHMP4AQ9BY43 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CHMP4AQ9BY43 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
CHMP4AQ9BY43 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
CHMP4AQ9BY43 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms