Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC096656.1-201ENST00000623826 1364 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
NKX3-1Q99801 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
NKX3-1Q99801 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 EOGT-210ENST00000615922 1931 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC009229.4-201ENST00000623854 1947 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
NKX3-1Q99801 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
NKX3-1Q99801 RNU6-224P-201ENST00000384055 107 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 Y_RNA.578-201ENST00000390903 88 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC093719.1-202ENST00000392735 373 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.98□□□□□ -1.77
NKX3-1Q99801 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
NKX3-1Q99801 RNU6-77P-201ENST00000410554 91 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 RPS3AP25-201ENST00000411660 793 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 VDAC1P9-201ENST00000412766 841 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 RSU1P3-201ENST00000412878 835 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 AL592310.1-201ENST00000414330 671 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 RBMY2KP-201ENST00000418221 992 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC092648.1-201ENST00000425870 423 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC073069.1-201ENST00000428657 441 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 MTND2P5-201ENST00000432656 1006 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 UBE2V1P5-201ENST00000440070 405 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 EIF2S2P2-201ENST00000447161 982 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 AL354710.1-201ENST00000453641 246 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC134050.1-201ENST00000495088 933 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC020699.1-201ENST00000505161 445 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC098799.3-201ENST00000506095 438 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 AF186190.1-201ENST00000517470 480 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 IGJP1-201ENST00000522682 475 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 CYCSP28-201ENST00000534284 321 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
NKX3-1Q99801 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC009117.1-201ENST00000563948 554 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC103792.1-201ENST00000603591 919 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 AL445435.1-201ENST00000604232 665 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC091979.2-201ENST00000607514 214 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC009237.15-201ENST00000610252 501 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 MIR6820-201ENST00000611508 62 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
NKX3-1Q99801 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
NKX3-1Q99801 LINC00901.1-201ENST00000617252 152 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC087385.3-201ENST00000620477 187 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC112694.2-201ENST00000623697 768 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC016717.3-201ENST00000624730 554 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 AL109659.3-201ENST00000624985 950 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC017104.5-201ENST00000637647 639 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 AL353743.4-201ENST00000422653 1547 ntBASIC3.98□□□□□ -1.77
NKX3-1Q99801 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
NKX3-1Q99801 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
NKX3-1Q99801 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
NKX3-1Q99801 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
NKX3-1Q99801 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
NKX3-1Q99801 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
NKX3-1Q99801 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC3.97□□□□□ -1.77
NKX3-1Q99801 AC068254.2-201ENST00000623938 3577 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
NKX3-1Q99801 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
NKX3-1Q99801 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC3.97□□□□□ -1.77
NKX3-1Q99801 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
NKX3-1Q99801 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC3.97□□□□□ -1.77
NKX3-1Q99801 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.97□□□□□ -1.77
NKX3-1Q99801 RNU6-549P-201ENST00000384433 107 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 RNU6-1242P-201ENST00000391052 103 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 AL121834.1-202ENST00000404494 277 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 RNA5SP146-201ENST00000410743 123 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 RNU4-22P-201ENST00000411058 166 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 RNU6-575P-201ENST00000411326 105 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 AL591848.1-201ENST00000413092 322 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 AC009237.10-201ENST00000414112 510 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 140.5 ms