Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 ELOCP15-201ENST00000442090 332 ntBASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 RPL7AP61-201ENST00000443410 636 ntBASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 CYCSP24-201ENST00000445119 316 ntBASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 snoU13.20-201ENST00000459180 104 ntBASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 RN7SL443P-201ENST00000464331 290 ntBASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 AC023424.1-201ENST00000496058 459 ntBASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 ENPP7P11-201ENST00000505915 627 ntBASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 NDUFB5P1-201ENST00000508134 564 ntBASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 AC024909.2-201ENST00000553035 286 ntBASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 AC103881.1-201ENST00000603476 538 ntBASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 CLPTM1LP1-201ENST00000604519 484 ntBASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 TEX41-254ENST00000626394 423 ntTSL 5 BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 AL731532.2-201ENST00000623542 1953 ntBASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC4.96□□□□□ -1.62
PTCHD3Q3KNS1 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 Z95331.1-201ENST00000623075 23112 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 RNU6-623P-201ENST00000363143 105 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 RN7SKP113-201ENST00000363891 295 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 RNU4-24P-201ENST00000364565 139 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 SUGT1P1-201ENST00000379514 476 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 RNU6-1151P-201ENST00000384684 107 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 RNU6-272P-201ENST00000411028 104 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 DNAJA1P2-201ENST00000421360 1197 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 AL022400.1-201ENST00000423946 935 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 ACTR3P2-201ENST00000439585 1257 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 AL591503.2-201ENST00000442314 1005 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 MTCO3P11-201ENST00000455103 774 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 RNU6-1218P-201ENST00000458990 108 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 MTND1P16-201ENST00000465177 898 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 AC231760.1-201ENST00000498002 260 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 AC147055.4-201ENST00000504399 745 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 snoU109.6-201ENST00000516831 118 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 RNU6-678P-201ENST00000516832 109 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 AC068714.1-201ENST00000559623 800 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 MYLK-221ENST00000583087 678 ntTSL 4 BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 AL031985.2-201ENST00000600955 480 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 AC133552.5-201ENST00000604266 540 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 AL390816.3-201ENST00000604527 1066 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 AC005332.6-201ENST00000613178 446 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 AC069209.1-201ENST00000619282 651 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 AP003072.4-201ENST00000624580 310 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 AC091965.5-201ENST00000624785 342 ntBASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
PTCHD3Q3KNS1 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.94□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms