Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSH6P52701 AL035425.3-201ENST00000564206 4996 ntBASIC5.33□□□□□ -1.56
MSH6P52701 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC5.33□□□□□ -1.56
MSH6P52701 RNU6-233P-201ENST00000410845 141 ntBASIC5.33□□□□□ -1.56
MSH6P52701 RPL7AP73-201ENST00000413490 353 ntBASIC5.33□□□□□ -1.56
MSH6P52701 RPS23P10-201ENST00000416185 486 ntBASIC5.33□□□□□ -1.56
MSH6P52701 OR6C64P-201ENST00000419708 825 ntBASIC5.33□□□□□ -1.56
MSH6P52701 RPL7P44-201ENST00000424827 742 ntBASIC5.33□□□□□ -1.56
MSH6P52701 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC5.33□□□□□ -1.56
MSH6P52701 SETD6P1-201ENST00000444575 317 ntBASIC5.33□□□□□ -1.56
MSH6P52701 AC008481.1-201ENST00000463278 396 ntBASIC5.33□□□□□ -1.56
MSH6P52701 RPL7P23-201ENST00000493874 747 ntBASIC5.33□□□□□ -1.56
MSH6P52701 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC5.33□□□□□ -1.56
MSH6P52701 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC5.33□□□□□ -1.56
MSH6P52701 AC022695.1-201ENST00000522089 237 ntBASIC5.33□□□□□ -1.56
MSH6P52701 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
MSH6P52701 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC5.33□□□□□ -1.56
MSH6P52701 AC011816.2-201ENST00000607089 556 ntBASIC5.33□□□□□ -1.56
MSH6P52701 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
MSH6P52701 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
MSH6P52701 HCFC2P1-201ENST00000392864 1592 ntBASIC5.33□□□□□ -1.56
MSH6P52701 AC092435.4-201ENST00000623012 4159 ntBASIC5.33□□□□□ -1.56
MSH6P52701 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSH6P52701 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
MSH6P52701 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSH6P52701 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
MSH6P52701 AC020633.1-201ENST00000468439 2247 ntBASIC5.32□□□□□ -1.56
MSH6P52701 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSH6P52701 Y_RNA.510-201ENST00000384511 114 ntBASIC5.32□□□□□ -1.56
MSH6P52701 RPL7P60-201ENST00000397636 735 ntBASIC5.32□□□□□ -1.56
MSH6P52701 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC5.32□□□□□ -1.56
MSH6P52701 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC5.32□□□□□ -1.56
MSH6P52701 AC114982.2-201ENST00000461396 358 ntBASIC5.32□□□□□ -1.56
MSH6P52701 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
MSH6P52701 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC5.32□□□□□ -1.56
MSH6P52701 AC069240.1-201ENST00000548774 375 ntBASIC5.32□□□□□ -1.56
MSH6P52701 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC5.32□□□□□ -1.56
MSH6P52701 AC105036.1-201ENST00000566222 271 ntBASIC5.32□□□□□ -1.56
MSH6P52701 AC022968.1-201ENST00000567372 442 ntBASIC5.32□□□□□ -1.56
MSH6P52701 AC007599.1-201ENST00000568688 1174 ntBASIC5.32□□□□□ -1.56
MSH6P52701 AC135507.2-201ENST00000612443 309 ntBASIC5.32□□□□□ -1.56
MSH6P52701 MIR7154-201ENST00000620673 73 ntBASIC5.32□□□□□ -1.56
MSH6P52701 AC138907.10-201ENST00000623708 983 ntBASIC5.32□□□□□ -1.56
MSH6P52701 ATE1-AS1-202ENST00000636460 506 ntBASIC5.32□□□□□ -1.56
MSH6P52701 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSH6P52701 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSH6P52701 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC5.32□□□□□ -1.56
MSH6P52701 AC139713.2-215ENST00000641428 5037 ntBASIC5.32□□□□□ -1.56
MSH6P52701 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSH6P52701 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
MSH6P52701 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSH6P52701 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSH6P52701 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSH6P52701 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC5.32□□□□□ -1.56
MSH6P52701 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
MSH6P52701 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
MSH6P52701 AC004944.1-201ENST00000517807 3059 ntBASIC5.31□□□□□ -1.56
MSH6P52701 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC5.31□□□□□ -1.56
MSH6P52701 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
MSH6P52701 SNORA48.5-201ENST00000391143 135 ntBASIC5.31□□□□□ -1.56
MSH6P52701 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
MSH6P52701 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC5.31□□□□□ -1.56
MSH6P52701 VN1R51P-201ENST00000411675 945 ntBASIC5.31□□□□□ -1.56
MSH6P52701 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC5.31□□□□□ -1.56
MSH6P52701 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC5.31□□□□□ -1.56
MSH6P52701 UBDP1-202ENST00000457888 382 ntBASIC5.31□□□□□ -1.56
MSH6P52701 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC5.31□□□□□ -1.56
MSH6P52701 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC5.31□□□□□ -1.56
MSH6P52701 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
MSH6P52701 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC5.31□□□□□ -1.56
MSH6P52701 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC5.31□□□□□ -1.56
MSH6P52701 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC5.31□□□□□ -1.56
MSH6P52701 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.31□□□□□ -1.56
MSH6P52701 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
MSH6P52701 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.31□□□□□ -1.56
MSH6P52701 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
MSH6P52701 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
MSH6P52701 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC5.3□□□□□ -1.56
MSH6P52701 SNORA38.1-201ENST00000364172 131 ntBASIC5.3□□□□□ -1.56
MSH6P52701 VDAC2P1-201ENST00000399358 958 ntBASIC5.3□□□□□ -1.56
MSH6P52701 MIR1251-201ENST00000408552 70 ntBASIC5.3□□□□□ -1.56
MSH6P52701 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC5.3□□□□□ -1.56
MSH6P52701 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
MSH6P52701 GEMIN8P3-201ENST00000445417 720 ntBASIC5.3□□□□□ -1.56
MSH6P52701 AP000942.1-201ENST00000463969 747 ntBASIC5.3□□□□□ -1.56
MSH6P52701 RN7SL271P-201ENST00000487601 295 ntBASIC5.3□□□□□ -1.56
MSH6P52701 OR4A12P-201ENST00000530847 918 ntBASIC5.3□□□□□ -1.56
MSH6P52701 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC5.3□□□□□ -1.56
MSH6P52701 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC5.3□□□□□ -1.56
MSH6P52701 NCAPGP2-201ENST00000557911 754 ntBASIC5.3□□□□□ -1.56
MSH6P52701 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC5.3□□□□□ -1.56
MSH6P52701 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC5.3□□□□□ -1.56
MSH6P52701 YPEL5P2-201ENST00000605553 359 ntBASIC5.3□□□□□ -1.56
MSH6P52701 AC124312.6-202ENST00000623624 418 ntBASIC5.3□□□□□ -1.56
MSH6P52701 OR6C71P-202ENST00000641886 1107 ntBASIC5.3□□□□□ -1.56
MSH6P52701 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
MSH6P52701 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.3□□□□□ -1.56
MSH6P52701 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC5.3□□□□□ -1.56
MSH6P52701 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
MSH6P52701 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms