Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 ARL2BPP3-201ENST00000421226 480 ntBASIC5.28□□□□□ -1.56
HOXC9P31274 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC5.28□□□□□ -1.56
HOXC9P31274 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC5.28□□□□□ -1.56
HOXC9P31274 AL050321.1-201ENST00000432363 400 ntBASIC5.28□□□□□ -1.56
HOXC9P31274 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC5.28□□□□□ -1.56
HOXC9P31274 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC5.28□□□□□ -1.56
HOXC9P31274 GAS5-223ENST00000452197 483 ntTSL 3 BASIC5.28□□□□□ -1.56
HOXC9P31274 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC5.28□□□□□ -1.56
HOXC9P31274 RPL7P15-201ENST00000461190 712 ntBASIC5.28□□□□□ -1.56
HOXC9P31274 AC078857.1-201ENST00000469870 667 ntBASIC5.28□□□□□ -1.56
HOXC9P31274 RPS3AP6-201ENST00000484430 795 ntBASIC5.28□□□□□ -1.56
HOXC9P31274 AC021146.7-201ENST00000509604 775 ntBASIC5.28□□□□□ -1.56
HOXC9P31274 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HOXC9P31274 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC5.28□□□□□ -1.56
HOXC9P31274 AC004923.2-201ENST00000529649 369 ntBASIC5.28□□□□□ -1.56
HOXC9P31274 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC5.28□□□□□ -1.56
HOXC9P31274 AC093014.1-201ENST00000548926 724 ntBASIC5.28□□□□□ -1.56
HOXC9P31274 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC5.28□□□□□ -1.56
HOXC9P31274 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC5.28□□□□□ -1.56
HOXC9P31274 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC5.28□□□□□ -1.56
HOXC9P31274 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC5.28□□□□□ -1.56
HOXC9P31274 FAM106CP-201ENST00000582212 507 ntBASIC5.28□□□□□ -1.56
HOXC9P31274 AC024933.1-201ENST00000608472 348 ntBASIC5.28□□□□□ -1.56
HOXC9P31274 MIR1264-201ENST00000616374 69 ntBASIC5.28□□□□□ -1.56
HOXC9P31274 AC009093.8-201ENST00000641769 292 ntBASIC5.28□□□□□ -1.56
HOXC9P31274 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HOXC9P31274 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC5.28□□□□□ -1.56
HOXC9P31274 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HOXC9P31274 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC5.27□□□□□ -1.57
HOXC9P31274 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HOXC9P31274 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC5.27□□□□□ -1.57
HOXC9P31274 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HOXC9P31274 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HOXC9P31274 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXC9P31274 AL355143.1-201ENST00000407101 841 ntBASIC5.27□□□□□ -1.57
HOXC9P31274 CRYBB2P1-203ENST00000415709 538 ntBASIC5.27□□□□□ -1.57
HOXC9P31274 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC5.27□□□□□ -1.57
HOXC9P31274 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HOXC9P31274 AC104306.1-201ENST00000449702 371 ntBASIC5.27□□□□□ -1.57
HOXC9P31274 ACTR3BP4-201ENST00000503033 1244 ntBASIC5.27□□□□□ -1.57
HOXC9P31274 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC5.27□□□□□ -1.57
HOXC9P31274 AC026782.2-201ENST00000510845 636 ntBASIC5.27□□□□□ -1.57
HOXC9P31274 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC5.27□□□□□ -1.57
HOXC9P31274 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC5.27□□□□□ -1.57
HOXC9P31274 IGLV3-26-201ENST00000520756 302 ntBASIC5.27□□□□□ -1.57
HOXC9P31274 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC5.27□□□□□ -1.57
HOXC9P31274 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC5.27□□□□□ -1.57
HOXC9P31274 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC5.27□□□□□ -1.57
HOXC9P31274 DNAJC19P3-201ENST00000594491 331 ntBASIC5.27□□□□□ -1.57
HOXC9P31274 BNIP3P39-201ENST00000601077 554 ntBASIC5.27□□□□□ -1.57
HOXC9P31274 MTCO2P22-201ENST00000603246 681 ntBASIC5.27□□□□□ -1.57
HOXC9P31274 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXC9P31274 AC097460.3-201ENST00000623099 442 ntBASIC5.27□□□□□ -1.57
HOXC9P31274 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
HOXC9P31274 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC5.27□□□□□ -1.57
HOXC9P31274 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC5.27□□□□□ -1.57
HOXC9P31274 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HOXC9P31274 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXC9P31274 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC5.27□□□□□ -1.57
HOXC9P31274 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
HOXC9P31274 AP002001.2-201ENST00000529025 1469 ntBASIC5.26□□□□□ -1.57
HOXC9P31274 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC5.26□□□□□ -1.57
HOXC9P31274 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
HOXC9P31274 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HOXC9P31274 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC5.26□□□□□ -1.57
HOXC9P31274 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HOXC9P31274 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC5.26□□□□□ -1.57
HOXC9P31274 MAPK10-320ENST00000641462 6696 ntBASIC5.26□□□□□ -1.57
HOXC9P31274 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
HOXC9P31274 SNORA63.3-201ENST00000362682 132 ntBASIC5.26□□□□□ -1.57
HOXC9P31274 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HOXC9P31274 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
HOXC9P31274 RNA5SP105-201ENST00000391123 113 ntBASIC5.26□□□□□ -1.57
HOXC9P31274 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
HOXC9P31274 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HOXC9P31274 SNORA3.3-201ENST00000408712 125 ntBASIC5.26□□□□□ -1.57
HOXC9P31274 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC5.26□□□□□ -1.57
HOXC9P31274 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC5.26□□□□□ -1.57
HOXC9P31274 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC5.26□□□□□ -1.57
HOXC9P31274 AC083863.1-201ENST00000438811 231 ntBASIC5.26□□□□□ -1.57
HOXC9P31274 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC5.26□□□□□ -1.57
HOXC9P31274 AL353898.1-201ENST00000444055 238 ntBASIC5.26□□□□□ -1.57
HOXC9P31274 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC5.26□□□□□ -1.57
HOXC9P31274 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC5.26□□□□□ -1.57
HOXC9P31274 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HOXC9P31274 AC034244.2-201ENST00000514668 858 ntBASIC5.26□□□□□ -1.57
HOXC9P31274 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC5.26□□□□□ -1.57
HOXC9P31274 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC5.26□□□□□ -1.57
HOXC9P31274 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC5.26□□□□□ -1.57
HOXC9P31274 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC5.26□□□□□ -1.57
HOXC9P31274 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.26□□□□□ -1.57
HOXC9P31274 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC5.26□□□□□ -1.57
HOXC9P31274 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC5.26□□□□□ -1.57
HOXC9P31274 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC5.26□□□□□ -1.57
HOXC9P31274 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC5.26□□□□□ -1.57
HOXC9P31274 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC5.26□□□□□ -1.57
HOXC9P31274 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC5.26□□□□□ -1.57
HOXC9P31274 MIR3944-201ENST00000581277 108 ntBASIC5.26□□□□□ -1.57
HOXC9P31274 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC5.26□□□□□ -1.57
HOXC9P31274 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 145.1 ms