Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VCANP13611 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
VCANP13611 TOMM20P4-201ENST00000427861 435 ntBASIC3.71□□□□□ -1.82
VCANP13611 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.71□□□□□ -1.82
VCANP13611 AC008802.1-201ENST00000519121 791 ntBASIC3.71□□□□□ -1.82
VCANP13611 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.71□□□□□ -1.82
VCANP13611 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC3.71□□□□□ -1.82
VCANP13611 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VCANP13611 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.7□□□□□ -1.82
VCANP13611 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
VCANP13611 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC3.7□□□□□ -1.82
VCANP13611 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC3.7□□□□□ -1.82
VCANP13611 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
VCANP13611 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VCANP13611 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.7□□□□□ -1.82
VCANP13611 RPS20P22-201ENST00000473700 357 ntBASIC3.7□□□□□ -1.82
VCANP13611 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.7□□□□□ -1.82
VCANP13611 HMGB3P16-201ENST00000508037 287 ntBASIC3.7□□□□□ -1.82
VCANP13611 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.7□□□□□ -1.82
VCANP13611 RNA5SP208-201ENST00000516156 78 ntBASIC3.7□□□□□ -1.82
VCANP13611 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.7□□□□□ -1.82
VCANP13611 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VCANP13611 DCAF13P3-201ENST00000561147 1334 ntBASIC3.7□□□□□ -1.82
VCANP13611 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC3.7□□□□□ -1.82
VCANP13611 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
VCANP13611 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC3.7□□□□□ -1.82
VCANP13611 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VCANP13611 ARHGEF12-201ENST00000356641 6891 ntTSL 5 BASIC3.7□□□□□ -1.82
VCANP13611 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
VCANP13611 Y_RNA.40-201ENST00000362645 93 ntBASIC3.7□□□□□ -1.82
VCANP13611 TRGV5P-201ENST00000419915 354 ntBASIC3.7□□□□□ -1.82
VCANP13611 AC239809.1-201ENST00000450470 217 ntBASIC3.7□□□□□ -1.82
VCANP13611 AC091826.1-201ENST00000514065 313 ntBASIC3.7□□□□□ -1.82
VCANP13611 PHBP17-201ENST00000528576 541 ntBASIC3.7□□□□□ -1.82
VCANP13611 Xist_exon4.1-201ENST00000615964 126 ntBASIC3.7□□□□□ -1.82
VCANP13611 BNIP3P41-202ENST00000616656 861 ntBASIC3.7□□□□□ -1.82
VCANP13611 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
VCANP13611 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VCANP13611 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.7□□□□□ -1.82
VCANP13611 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC3.7□□□□□ -1.82
VCANP13611 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
VCANP13611 AP002512.4-202ENST00000641599 4530 ntBASIC3.7□□□□□ -1.82
VCANP13611 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC3.7□□□□□ -1.82
VCANP13611 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.69□□□□□ -1.82
VCANP13611 AL031679.1-201ENST00000400616 525 ntBASIC3.69□□□□□ -1.82
VCANP13611 RPS17P11-201ENST00000474297 293 ntBASIC3.69□□□□□ -1.82
VCANP13611 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC3.69□□□□□ -1.82
VCANP13611 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.69□□□□□ -1.82
VCANP13611 PRELID3BP3-201ENST00000584963 545 ntBASIC3.69□□□□□ -1.82
VCANP13611 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
VCANP13611 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VCANP13611 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VCANP13611 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.69□□□□□ -1.82
VCANP13611 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC3.69□□□□□ -1.82
VCANP13611 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC3.69□□□□□ -1.82
VCANP13611 Z99755.1-201ENST00000414048 380 ntBASIC3.69□□□□□ -1.82
VCANP13611 AC010740.1-201ENST00000417035 684 ntBASIC3.69□□□□□ -1.82
VCANP13611 NUP35P1-201ENST00000422734 947 ntBASIC3.69□□□□□ -1.82
VCANP13611 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC3.69□□□□□ -1.82
VCANP13611 CYCSP28-201ENST00000534284 321 ntBASIC3.69□□□□□ -1.82
VCANP13611 AC007599.1-201ENST00000568688 1174 ntBASIC3.69□□□□□ -1.82
VCANP13611 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.69□□□□□ -1.82
VCANP13611 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.69□□□□□ -1.82
VCANP13611 AC241585.2-209ENST00000638217 143 ntBASIC3.69□□□□□ -1.82
VCANP13611 HSPD1P14-201ENST00000432666 1618 ntBASIC3.69□□□□□ -1.82
VCANP13611 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC3.69□□□□□ -1.82
VCANP13611 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC3.69□□□□□ -1.82
VCANP13611 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
VCANP13611 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
VCANP13611 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC3.69□□□□□ -1.82
VCANP13611 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC3.69□□□□□ -1.82
VCANP13611 RNA5SP197-201ENST00000363357 119 ntBASIC3.69□□□□□ -1.82
VCANP13611 SNORA70B-201ENST00000384210 135 ntBASIC3.69□□□□□ -1.82
VCANP13611 AL645931.1-201ENST00000439737 410 ntBASIC3.69□□□□□ -1.82
VCANP13611 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.69□□□□□ -1.82
VCANP13611 AC108751.2-201ENST00000469993 231 ntBASIC3.69□□□□□ -1.82
VCANP13611 AC084198.1-201ENST00000477747 402 ntBASIC3.69□□□□□ -1.82
VCANP13611 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.69□□□□□ -1.82
VCANP13611 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
VCANP13611 OR5H2-201ENST00000355273 945 ntBASIC3.68□□□□□ -1.82
VCANP13611 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
VCANP13611 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
VCANP13611 RPL6P21-201ENST00000418672 846 ntBASIC3.68□□□□□ -1.82
VCANP13611 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.68□□□□□ -1.82
VCANP13611 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.68□□□□□ -1.82
VCANP13611 S100A11P1-201ENST00000477525 312 ntBASIC3.68□□□□□ -1.82
VCANP13611 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.68□□□□□ -1.82
VCANP13611 AC012417.1-201ENST00000582307 1039 ntBASIC3.68□□□□□ -1.82
VCANP13611 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.68□□□□□ -1.82
VCANP13611 GMCL1P2-201ENST00000605230 823 ntBASIC3.68□□□□□ -1.82
VCANP13611 AC018692.3-201ENST00000623929 123 ntBASIC3.68□□□□□ -1.82
VCANP13611 AL137918.1-201ENST00000624542 1922 ntBASIC3.68□□□□□ -1.82
VCANP13611 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
VCANP13611 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC3.68□□□□□ -1.82
VCANP13611 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
VCANP13611 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.68□□□□□ -1.82
VCANP13611 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC3.68□□□□□ -1.82
VCANP13611 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
VCANP13611 AL391417.1-201ENST00000404100 426 ntBASIC3.68□□□□□ -1.82
VCANP13611 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 119.7 ms