Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
VPS4AQ9UN37 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.92□□□□□ -1.62
VPS4AQ9UN37 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
VPS4AQ9UN37 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 RNU6-317P-201ENST00000384031 107 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AL359643.1-201ENST00000404109 423 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AL035079.1-201ENST00000405210 287 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AL590290.1-201ENST00000405336 380 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AC114814.2-201ENST00000419195 485 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AL365203.2-201ENST00000423444 196 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 UBE2D3P1-201ENST00000436669 444 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 MTND4P32-201ENST00000437189 1237 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AL450263.2-201ENST00000439400 589 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 KATNBL1P3-201ENST00000443475 909 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 HMGB1P48-201ENST00000446155 598 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 RHEBP2-201ENST00000450289 600 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AC104971.1-201ENST00000495117 578 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AC098799.3-201ENST00000506095 438 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 MTND1P22-201ENST00000510572 951 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AC008837.2-201ENST00000513076 418 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AC012400.1-201ENST00000518452 381 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AC024940.3-201ENST00000538551 316 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AC008015.1-201ENST00000555505 465 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 RPL10P14-201ENST00000565265 298 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 GMFG-202ENST00000594700 397 ntTSL 2 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 BNIP3P26-201ENST00000600827 554 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AL137072.1-201ENST00000603444 466 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AC087783.2-201ENST00000605070 562 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AC023813.4-201ENST00000607580 580 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AC105227.2-201ENST00000615075 605 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AC023509.5-201ENST00000617434 807 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AC090527.3-201ENST00000619041 548 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 MIR4278-201ENST00000636094 69 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 AC092747.4-201ENST00000620519 1861 ntBASIC4.91□□□□□ -1.62
VPS4AQ9UN37 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS4AQ9UN37 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.9□□□□□ -1.62
VPS4AQ9UN37 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.9□□□□□ -1.62
VPS4AQ9UN37 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.9□□□□□ -1.62
VPS4AQ9UN37 INTS6P1-201ENST00000504674 2530 ntBASIC4.9□□□□□ -1.62
VPS4AQ9UN37 AC046144.1-201ENST00000478559 1853 ntBASIC4.9□□□□□ -1.62
VPS4AQ9UN37 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.9□□□□□ -1.62
VPS4AQ9UN37 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
VPS4AQ9UN37 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
VPS4AQ9UN37 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
VPS4AQ9UN37 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC4.9□□□□□ -1.62
VPS4AQ9UN37 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
VPS4AQ9UN37 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC4.9□□□□□ -1.62
VPS4AQ9UN37 RNA5SP90-201ENST00000364801 99 ntBASIC4.9□□□□□ -1.63
VPS4AQ9UN37 SNORA62-201ENST00000365493 153 ntBASIC4.9□□□□□ -1.63
VPS4AQ9UN37 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 OR51A3P-201ENST00000413596 924 ntBASIC4.9□□□□□ -1.63
VPS4AQ9UN37 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 USP9YP26-201ENST00000421008 661 ntBASIC4.9□□□□□ -1.63
VPS4AQ9UN37 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 402.8 ms