Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC090751.1-201ENST00000566966 267 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 MTND4LP24-201ENST00000572277 291 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC4□□□□□ -1.77
NKX3-1Q99801 EIF1P6-201ENST00000600054 334 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 AC009948.4-201ENST00000604692 675 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 AC006946.3-201ENST00000609791 756 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 AC063944.3-201ENST00000609969 533 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 AL158196.1-201ENST00000616786 434 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 AC009704.2-201ENST00000618739 483 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 OR14L1P-202ENST00000641545 3009 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
NKX3-1Q99801 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC4□□□□□ -1.77
NKX3-1Q99801 AC017104.4-201ENST00000636283 1592 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC4□□□□□ -1.77
NKX3-1Q99801 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4□□□□□ -1.77
NKX3-1Q99801 AL031119.1-201ENST00000404707 1879 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
NKX3-1Q99801 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
NKX3-1Q99801 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4□□□□□ -1.77
NKX3-1Q99801 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4□□□□□ -1.77
NKX3-1Q99801 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4□□□□□ -1.77
NKX3-1Q99801 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4□□□□□ -1.77
NKX3-1Q99801 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4□□□□□ -1.77
NKX3-1Q99801 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4□□□□□ -1.77
NKX3-1Q99801 NSRP1P1-201ENST00000444067 1693 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 AC018529.3-201ENST00000624212 2254 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
NKX3-1Q99801 AC090017.1-201ENST00000548612 1779 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
NKX3-1Q99801 NCLP2-201ENST00000416078 1462 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
NKX3-1Q99801 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC3.99□□□□□ -1.77
NKX3-1Q99801 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
NKX3-1Q99801 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
NKX3-1Q99801 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 RN7SKP149-201ENST00000363008 344 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 Y_RNA.472-201ENST00000384322 102 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 MIR525-201ENST00000384978 85 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 HDGFP1-201ENST00000405943 252 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 IL6-206ENST00000407492 926 ntTSL 3 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 RNU2-50P-201ENST00000410494 143 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 SSR1P2-201ENST00000415208 787 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 AC073136.2-201ENST00000417282 849 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 AC027644.1-201ENST00000419595 298 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 AC004074.1-201ENST00000421810 1063 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 AP001324.1-201ENST00000428553 399 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 AC008072.1-201ENST00000434254 824 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 AC234064.1-201ENST00000436312 247 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 ARL4AP3-201ENST00000441452 574 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 AL592437.1-201ENST00000443781 492 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 SLC25A18P1-201ENST00000449385 454 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 ZNF736P8Y-201ENST00000451913 669 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 MRPL35P4-201ENST00000453682 566 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 AURKAPS2-201ENST00000454983 333 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 AC063943.1-201ENST00000465434 453 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 RPL23AP71-201ENST00000470966 469 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 AC091959.2-201ENST00000477363 321 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 RN7SL817P-201ENST00000480777 288 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 AC073522.1-201ENST00000483312 377 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 MTCO3P35-201ENST00000485582 781 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 IGBP1P5-201ENST00000507524 1000 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 LY96-202ENST00000518893 430 ntTSL 3 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 HMGB1P1-201ENST00000522557 636 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
NKX3-1Q99801 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 AC027455.1-201ENST00000574104 594 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 AL392112.1-201ENST00000605115 829 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 AL450336.1-201ENST00000605180 586 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 AL008729.2-201ENST00000606393 473 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 VN1R74P-201ENST00000613259 503 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 AC023509.5-201ENST00000617434 807 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 AC006386.1-201ENST00000619436 415 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 AC123767.1-202ENST00000620407 817 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 AC140113.4-201ENST00000622087 222 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 AC068787.1-201ENST00000623908 691 ntBASIC3.99□□□□□ -1.77
NKX3-1Q99801 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
NKX3-1Q99801 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC3.99□□□□□ -1.77
NKX3-1Q99801 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
NKX3-1Q99801 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 176.9 ms