Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.24□□□□□ -1.73
VPS35Q96QK1 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS35Q96QK1 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS35Q96QK1 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.24□□□□□ -1.73
VPS35Q96QK1 MIR3138-201ENST00000585238 82 ntBASIC4.24□□□□□ -1.73
VPS35Q96QK1 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
VPS35Q96QK1 AL445363.3-201ENST00000623080 671 ntBASIC4.24□□□□□ -1.73
VPS35Q96QK1 AC067852.7-201ENST00000623270 535 ntBASIC4.24□□□□□ -1.73
VPS35Q96QK1 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
VPS35Q96QK1 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS35Q96QK1 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS35Q96QK1 AC006042.3-201ENST00000454684 1469 ntBASIC4.24□□□□□ -1.73
VPS35Q96QK1 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
VPS35Q96QK1 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
VPS35Q96QK1 AC134882.1-201ENST00000603738 1676 ntBASIC4.23□□□□□ -1.73
VPS35Q96QK1 EED-206ENST00000527888 1422 ntTSL 2 BASIC4.23□□□□□ -1.73
VPS35Q96QK1 RNF6P1-201ENST00000444889 1784 ntBASIC4.23□□□□□ -1.73
VPS35Q96QK1 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
VPS35Q96QK1 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS35Q96QK1 RAD1P1-201ENST00000231383 813 ntBASIC4.23□□□□□ -1.73
VPS35Q96QK1 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.23□□□□□ -1.73
VPS35Q96QK1 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
VPS35Q96QK1 AL589826.1-201ENST00000340697 249 ntBASIC4.23□□□□□ -1.73
VPS35Q96QK1 SNORD74.4-201ENST00000364129 80 ntBASIC4.23□□□□□ -1.73
VPS35Q96QK1 SNORA62-201ENST00000365493 153 ntBASIC4.23□□□□□ -1.73
VPS35Q96QK1 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
VPS35Q96QK1 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS35Q96QK1 FAM204CP-201ENST00000424489 642 ntBASIC4.23□□□□□ -1.73
VPS35Q96QK1 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS35Q96QK1 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
VPS35Q96QK1 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS35Q96QK1 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS35Q96QK1 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS35Q96QK1 RPS26P28-201ENST00000470806 348 ntBASIC4.23□□□□□ -1.73
VPS35Q96QK1 UQCRHP4-201ENST00000471686 272 ntBASIC4.23□□□□□ -1.73
VPS35Q96QK1 SYT14P1-201ENST00000481459 721 ntBASIC4.23□□□□□ -1.73
VPS35Q96QK1 BNIP3P41-201ENST00000503774 571 ntBASIC4.23□□□□□ -1.73
VPS35Q96QK1 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC4.23□□□□□ -1.73
VPS35Q96QK1 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS35Q96QK1 KCTD9P2-201ENST00000512203 1013 ntBASIC4.23□□□□□ -1.73
VPS35Q96QK1 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS35Q96QK1 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS35Q96QK1 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS35Q96QK1 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.23□□□□□ -1.73
VPS35Q96QK1 AL121834.1-201ENST00000572284 509 ntBASIC4.23□□□□□ -1.73
VPS35Q96QK1 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS35Q96QK1 ZNF92P3-201ENST00000596594 954 ntBASIC4.23□□□□□ -1.73
VPS35Q96QK1 AL355816.1-201ENST00000607951 118 ntBASIC4.23□□□□□ -1.73
VPS35Q96QK1 AC005962.2-201ENST00000611427 652 ntBASIC4.23□□□□□ -1.73
VPS35Q96QK1 MLECP1-201ENST00000615893 709 ntBASIC4.23□□□□□ -1.73
VPS35Q96QK1 AC123768.4-201ENST00000616244 701 ntBASIC4.23□□□□□ -1.73
VPS35Q96QK1 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS35Q96QK1 AC008013.2-202ENST00000637965 364 ntBASIC4.23□□□□□ -1.73
VPS35Q96QK1 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
VPS35Q96QK1 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
VPS35Q96QK1 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS35Q96QK1 AL118496.1-201ENST00000440201 1812 ntBASIC4.23□□□□□ -1.73
VPS35Q96QK1 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.23□□□□□ -1.73
VPS35Q96QK1 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS35Q96QK1 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS35Q96QK1 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
VPS35Q96QK1 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS35Q96QK1 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS35Q96QK1 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS35Q96QK1 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS35Q96QK1 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VPS35Q96QK1 MIR1179-201ENST00000408703 91 ntBASIC4.22□□□□□ -1.73
VPS35Q96QK1 RNA5SP36-201ENST00000410197 133 ntBASIC4.22□□□□□ -1.73
VPS35Q96QK1 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS35Q96QK1 AL138785.1-201ENST00000425821 331 ntBASIC4.22□□□□□ -1.73
VPS35Q96QK1 RWDD4P2-201ENST00000426392 563 ntBASIC4.22□□□□□ -1.73
VPS35Q96QK1 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS35Q96QK1 RPS6P12-201ENST00000432491 726 ntBASIC4.22□□□□□ -1.73
VPS35Q96QK1 BTF3P10-201ENST00000433415 495 ntBASIC4.22□□□□□ -1.73
VPS35Q96QK1 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.22□□□□□ -1.73
VPS35Q96QK1 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS35Q96QK1 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.22□□□□□ -1.73
VPS35Q96QK1 MTND2P8-201ENST00000450555 1025 ntBASIC4.22□□□□□ -1.73
VPS35Q96QK1 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VPS35Q96QK1 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC4.22□□□□□ -1.73
VPS35Q96QK1 RWDD4P1-201ENST00000488019 565 ntBASIC4.22□□□□□ -1.73
VPS35Q96QK1 AC026979.1-201ENST00000492525 396 ntBASIC4.22□□□□□ -1.73
VPS35Q96QK1 PARP4P3-201ENST00000510265 317 ntBASIC4.22□□□□□ -1.73
VPS35Q96QK1 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VPS35Q96QK1 RN7SKP122-201ENST00000515923 296 ntBASIC4.22□□□□□ -1.73
VPS35Q96QK1 RNA5SP519-201ENST00000516480 119 ntBASIC4.22□□□□□ -1.73
VPS35Q96QK1 SNORA31.13-201ENST00000516624 135 ntBASIC4.22□□□□□ -1.73
VPS35Q96QK1 TBCA-203ENST00000517679 545 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS35Q96QK1 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS35Q96QK1 AP002812.4-201ENST00000532139 286 ntBASIC4.22□□□□□ -1.73
VPS35Q96QK1 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
VPS35Q96QK1 AL731537.2-201ENST00000561565 951 ntBASIC4.22□□□□□ -1.73
VPS35Q96QK1 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS35Q96QK1 IPO5P1-202ENST00000600039 287 ntBASIC4.22□□□□□ -1.73
VPS35Q96QK1 AC004775.1-201ENST00000607389 753 ntBASIC4.22□□□□□ -1.73
VPS35Q96QK1 AC006338.2-201ENST00000616864 791 ntBASIC4.22□□□□□ -1.73
VPS35Q96QK1 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS35Q96QK1 AL445567.2-201ENST00000618935 498 ntBASIC4.22□□□□□ -1.73
VPS35Q96QK1 AC024023.1-201ENST00000624530 922 ntBASIC4.22□□□□□ -1.73
VPS35Q96QK1 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms