Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL139395.1-201ENST00000603662 160 ntBASIC4.09□□□□□ -1.76
COL4A4P53420 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.09□□□□□ -1.76
COL4A4P53420 AC079298.2-201ENST00000623885 459 ntBASIC4.09□□□□□ -1.76
COL4A4P53420 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC4.09□□□□□ -1.76
COL4A4P53420 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.09□□□□□ -1.76
COL4A4P53420 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL4A4P53420 AC139426.3-201ENST00000605648 2059 ntBASIC4.08□□□□□ -1.76
COL4A4P53420 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL4A4P53420 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.08□□□□□ -1.76
COL4A4P53420 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL4A4P53420 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL4A4P53420 SNORD74.4-201ENST00000364129 80 ntBASIC4.08□□□□□ -1.76
COL4A4P53420 ZNF736P2Y-201ENST00000416040 1279 ntBASIC4.08□□□□□ -1.76
COL4A4P53420 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC4.08□□□□□ -1.76
COL4A4P53420 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC4.08□□□□□ -1.76
COL4A4P53420 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.08□□□□□ -1.76
COL4A4P53420 HMGB3P22-202ENST00000451823 572 ntBASIC4.08□□□□□ -1.76
COL4A4P53420 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL4A4P53420 AC017015.1-201ENST00000477387 286 ntBASIC4.08□□□□□ -1.76
COL4A4P53420 RN7SL271P-201ENST00000487601 295 ntBASIC4.08□□□□□ -1.76
COL4A4P53420 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC4.08□□□□□ -1.76
COL4A4P53420 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC4.08□□□□□ -1.76
COL4A4P53420 SNORA70.17-201ENST00000516449 133 ntBASIC4.08□□□□□ -1.76
COL4A4P53420 AC015813.4-201ENST00000610469 179 ntBASIC4.08□□□□□ -1.76
COL4A4P53420 MIR8057-201ENST00000620957 69 ntBASIC4.08□□□□□ -1.76
COL4A4P53420 SCARNA15.3-201ENST00000626315 122 ntBASIC4.08□□□□□ -1.76
COL4A4P53420 SCARNA4.1-201ENST00000628597 123 ntBASIC4.08□□□□□ -1.76
COL4A4P53420 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC4.08□□□□□ -1.76
COL4A4P53420 BTBD10P1-201ENST00000549824 1352 ntBASIC4.08□□□□□ -1.76
COL4A4P53420 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL4A4P53420 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
COL4A4P53420 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL4A4P53420 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL4A4P53420 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL4A4P53420 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL4A4P53420 GVINP1-202ENST00000531871 7271 ntBASIC4.08□□□□□ -1.76
COL4A4P53420 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL4A4P53420 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL4A4P53420 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL4A4P53420 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL4A4P53420 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.07□□□□□ -1.76
COL4A4P53420 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.07□□□□□ -1.76
COL4A4P53420 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
COL4A4P53420 GNG5P1-201ENST00000255500 204 ntBASIC4.07□□□□□ -1.76
COL4A4P53420 AL035423.1-201ENST00000420331 213 ntBASIC4.07□□□□□ -1.76
COL4A4P53420 AC017083.1-201ENST00000428093 483 ntBASIC4.07□□□□□ -1.76
COL4A4P53420 AL512649.1-201ENST00000428997 581 ntBASIC4.07□□□□□ -1.76
COL4A4P53420 CYCSP4-201ENST00000429682 331 ntBASIC4.07□□□□□ -1.76
COL4A4P53420 AC092447.2-201ENST00000435487 669 ntBASIC4.07□□□□□ -1.76
COL4A4P53420 RPSAP41-201ENST00000439695 860 ntBASIC4.07□□□□□ -1.76
COL4A4P53420 RPL21P10-201ENST00000463521 490 ntBASIC4.07□□□□□ -1.76
COL4A4P53420 AC010469.1-201ENST00000463864 576 ntBASIC4.07□□□□□ -1.76
COL4A4P53420 AC084198.1-201ENST00000477747 402 ntBASIC4.07□□□□□ -1.76
COL4A4P53420 MTND6P6-201ENST00000478031 263 ntBASIC4.07□□□□□ -1.76
COL4A4P53420 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4.07□□□□□ -1.76
COL4A4P53420 ACTR6P1-201ENST00000514311 1104 ntBASIC4.07□□□□□ -1.76
COL4A4P53420 SNORA70.18-201ENST00000516696 98 ntBASIC4.07□□□□□ -1.76
COL4A4P53420 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC4.07□□□□□ -1.76
COL4A4P53420 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC4.07□□□□□ -1.76
COL4A4P53420 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC4.07□□□□□ -1.76
COL4A4P53420 GNRHR2P1-201ENST00000555315 631 ntBASIC4.07□□□□□ -1.76
COL4A4P53420 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC4.07□□□□□ -1.76
COL4A4P53420 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.07□□□□□ -1.76
COL4A4P53420 AC016839.1-201ENST00000578162 867 ntBASIC4.07□□□□□ -1.76
COL4A4P53420 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.07□□□□□ -1.76
COL4A4P53420 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC4.07□□□□□ -1.76
COL4A4P53420 AL391001.1-201ENST00000602747 715 ntBASIC4.07□□□□□ -1.76
COL4A4P53420 AC079880.2-201ENST00000603790 1213 ntBASIC4.07□□□□□ -1.76
COL4A4P53420 AL354760.1-201ENST00000608357 643 ntBASIC4.07□□□□□ -1.76
COL4A4P53420 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC4.07□□□□□ -1.76
COL4A4P53420 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
COL4A4P53420 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
COL4A4P53420 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.07□□□□□ -1.76
COL4A4P53420 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC4.07□□□□□ -1.76
COL4A4P53420 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
COL4A4P53420 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.07□□□□□ -1.76
COL4A4P53420 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC4.07□□□□□ -1.76
COL4A4P53420 RNU6-673P-201ENST00000365084 104 ntBASIC4.06□□□□□ -1.76
COL4A4P53420 MIR1289-1-201ENST00000408836 144 ntBASIC4.06□□□□□ -1.76
COL4A4P53420 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC4.06□□□□□ -1.76
COL4A4P53420 BX119904.1-201ENST00000432026 348 ntBASIC4.06□□□□□ -1.76
COL4A4P53420 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC4.06□□□□□ -1.76
COL4A4P53420 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC4.06□□□□□ -1.76
COL4A4P53420 MRPL35P4-201ENST00000453682 566 ntBASIC4.06□□□□□ -1.76
COL4A4P53420 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC4.06□□□□□ -1.76
COL4A4P53420 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC4.06□□□□□ -1.76
COL4A4P53420 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC4.06□□□□□ -1.76
COL4A4P53420 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.06□□□□□ -1.76
COL4A4P53420 AL513477.2-201ENST00000607858 568 ntBASIC4.06□□□□□ -1.76
COL4A4P53420 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
COL4A4P53420 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
COL4A4P53420 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
COL4A4P53420 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL4A4P53420 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL4A4P53420 AC005261.6-201ENST00000623072 1387 ntBASIC4.06□□□□□ -1.76
COL4A4P53420 AC116096.1-201ENST00000566804 2314 ntBASIC4.06□□□□□ -1.76
COL4A4P53420 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
COL4A4P53420 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC4.06□□□□□ -1.76
COL4A4P53420 SNORA3.3-201ENST00000408712 125 ntBASIC4.06□□□□□ -1.76
COL4A4P53420 AL160275.2-201ENST00000412010 394 ntBASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms