Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
NUP98P52948 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
NUP98P52948 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
NUP98P52948 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
NUP98P52948 MIR34B-201ENST00000385076 84 ntBASIC4.56□□□□□ -1.68
NUP98P52948 SNORD17-201ENST00000390930 237 ntBASIC4.56□□□□□ -1.68
NUP98P52948 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.56□□□□□ -1.68
NUP98P52948 AC017079.2-201ENST00000416102 485 ntBASIC4.56□□□□□ -1.68
NUP98P52948 AC005019.1-201ENST00000436455 431 ntBASIC4.56□□□□□ -1.68
NUP98P52948 TMX2P1-201ENST00000436507 708 ntBASIC4.56□□□□□ -1.68
NUP98P52948 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.56□□□□□ -1.68
NUP98P52948 AC006480.1-201ENST00000449887 378 ntBASIC4.56□□□□□ -1.68
NUP98P52948 snoU13.24-201ENST00000458998 104 ntBASIC4.56□□□□□ -1.68
NUP98P52948 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC4.56□□□□□ -1.68
NUP98P52948 UBA52P3-201ENST00000491303 382 ntBASIC4.56□□□□□ -1.68
NUP98P52948 AC006960.3-201ENST00000561845 705 ntBASIC4.56□□□□□ -1.68
NUP98P52948 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.56□□□□□ -1.68
NUP98P52948 AC010591.1-201ENST00000603941 649 ntBASIC4.56□□□□□ -1.68
NUP98P52948 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.56□□□□□ -1.68
NUP98P52948 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.56□□□□□ -1.68
NUP98P52948 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
NUP98P52948 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.55□□□□□ -1.68
NUP98P52948 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
NUP98P52948 RNA5SP197-201ENST00000363357 119 ntBASIC4.55□□□□□ -1.68
NUP98P52948 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
NUP98P52948 MIR483-201ENST00000385070 76 ntBASIC4.55□□□□□ -1.68
NUP98P52948 RN7SKP53-201ENST00000411337 315 ntBASIC4.55□□□□□ -1.68
NUP98P52948 RPL21P110-201ENST00000433345 446 ntBASIC4.55□□□□□ -1.68
NUP98P52948 ATP5HP2-201ENST00000433885 485 ntBASIC4.55□□□□□ -1.68
NUP98P52948 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.55□□□□□ -1.68
NUP98P52948 AC010655.1-201ENST00000449336 292 ntBASIC4.55□□□□□ -1.68
NUP98P52948 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC4.55□□□□□ -1.68
NUP98P52948 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC4.55□□□□□ -1.68
NUP98P52948 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC4.55□□□□□ -1.68
NUP98P52948 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC4.55□□□□□ -1.68
NUP98P52948 CSNK1A1P1-202ENST00000563423 981 ntBASIC4.55□□□□□ -1.68
NUP98P52948 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.55□□□□□ -1.68
NUP98P52948 AC006077.1-201ENST00000604746 343 ntBASIC4.55□□□□□ -1.68
NUP98P52948 AC091905.1-201ENST00000624400 311 ntBASIC4.55□□□□□ -1.68
NUP98P52948 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.55□□□□□ -1.68
NUP98P52948 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
NUP98P52948 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.55□□□□□ -1.68
NUP98P52948 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC4.55□□□□□ -1.68
NUP98P52948 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC4.55□□□□□ -1.68
NUP98P52948 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
NUP98P52948 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.54□□□□□ -1.68
NUP98P52948 USP8P1-201ENST00000494673 3183 ntBASIC4.54□□□□□ -1.68
NUP98P52948 AC058791.1-201ENST00000608412 3198 ntBASIC4.54□□□□□ -1.68
NUP98P52948 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.54□□□□□ -1.68
NUP98P52948 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
NUP98P52948 NDUFB4P4-201ENST00000404822 243 ntBASIC4.54□□□□□ -1.68
NUP98P52948 AL158156.1-201ENST00000422509 473 ntBASIC4.54□□□□□ -1.68
NUP98P52948 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.54□□□□□ -1.68
NUP98P52948 RPL5P30-201ENST00000465511 891 ntBASIC4.54□□□□□ -1.68
NUP98P52948 RN7SL601P-201ENST00000471221 293 ntBASIC4.54□□□□□ -1.68
NUP98P52948 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
NUP98P52948 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC4.54□□□□□ -1.68
NUP98P52948 MIR5195-201ENST00000583555 115 ntBASIC4.54□□□□□ -1.68
NUP98P52948 AL353600.1-201ENST00000608148 251 ntBASIC4.54□□□□□ -1.68
NUP98P52948 Xist_exon4.1-201ENST00000615964 126 ntBASIC4.54□□□□□ -1.68
NUP98P52948 AC069209.1-201ENST00000619282 651 ntBASIC4.54□□□□□ -1.68
NUP98P52948 AL669942.2-201ENST00000620352 697 ntBASIC4.54□□□□□ -1.68
NUP98P52948 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC4.54□□□□□ -1.68
NUP98P52948 AC138627.1-204ENST00000641894 765 ntBASIC4.54□□□□□ -1.68
NUP98P52948 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
NUP98P52948 AC010300.1-201ENST00000600671 5134 ntBASIC4.54□□□□□ -1.68
NUP98P52948 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
NUP98P52948 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
NUP98P52948 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
NUP98P52948 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
NUP98P52948 AC007685.1-201ENST00000329806 452 ntBASIC4.53□□□□□ -1.68
NUP98P52948 RNA5SP50-201ENST00000363731 107 ntBASIC4.53□□□□□ -1.68
NUP98P52948 SDCBPP2-201ENST00000424643 885 ntBASIC4.53□□□□□ -1.68
NUP98P52948 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.53□□□□□ -1.68
NUP98P52948 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.53□□□□□ -1.68
NUP98P52948 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
NUP98P52948 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC4.53□□□□□ -1.68
NUP98P52948 AL133244.1-201ENST00000456007 258 ntBASIC4.53□□□□□ -1.68
NUP98P52948 STMN1P2-201ENST00000508435 439 ntBASIC4.53□□□□□ -1.68
NUP98P52948 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC4.53□□□□□ -1.68
NUP98P52948 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
NUP98P52948 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC4.53□□□□□ -1.68
NUP98P52948 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
NUP98P52948 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
NUP98P52948 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC4.53□□□□□ -1.68
NUP98P52948 AC092641.1-201ENST00000440229 772 ntBASIC4.53□□□□□ -1.68
NUP98P52948 CYCSP32-201ENST00000440548 321 ntBASIC4.53□□□□□ -1.68
NUP98P52948 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC4.53□□□□□ -1.68
NUP98P52948 RPS4XP12-201ENST00000461747 709 ntBASIC4.53□□□□□ -1.68
NUP98P52948 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC4.53□□□□□ -1.68
NUP98P52948 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.53□□□□□ -1.68
NUP98P52948 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC4.53□□□□□ -1.68
NUP98P52948 RPL21P12-201ENST00000559810 515 ntBASIC4.53□□□□□ -1.68
NUP98P52948 AC009303.3-201ENST00000591103 736 ntBASIC4.53□□□□□ -1.68
NUP98P52948 AL157762.1-201ENST00000619612 415 ntBASIC4.53□□□□□ -1.68
NUP98P52948 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.53□□□□□ -1.68
NUP98P52948 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC4.52□□□□□ -1.69
NUP98P52948 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.52□□□□□ -1.69
NUP98P52948 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
NUP98P52948 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms