Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.2□□□□□ -1.58
MSX2P35548 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.2□□□□□ -1.58
MSX2P35548 MTND4P23-201ENST00000447723 1363 ntBASIC5.2□□□□□ -1.58
MSX2P35548 TCP11X1-202ENST00000622971 1372 ntBASIC5.2□□□□□ -1.58
MSX2P35548 AC093775.1-201ENST00000624154 1868 ntBASIC5.2□□□□□ -1.58
MSX2P35548 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.2□□□□□ -1.58
MSX2P35548 QRSL1P1-201ENST00000400977 1540 ntBASIC5.2□□□□□ -1.58
MSX2P35548 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
MSX2P35548 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
MSX2P35548 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC5.2□□□□□ -1.58
MSX2P35548 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
MSX2P35548 SNORA72.1-201ENST00000363485 129 ntBASIC5.2□□□□□ -1.58
MSX2P35548 RNA5SP500-201ENST00000364486 119 ntBASIC5.2□□□□□ -1.58
MSX2P35548 RN7SKP269-201ENST00000365545 319 ntBASIC5.2□□□□□ -1.58
MSX2P35548 PKIB-203ENST00000368446 556 ntTSL 2 BASIC5.2□□□□□ -1.58
MSX2P35548 SNORA51.9-201ENST00000384295 124 ntBASIC5.2□□□□□ -1.58
MSX2P35548 EI24P3-201ENST00000399046 1062 ntBASIC5.2□□□□□ -1.58
MSX2P35548 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
MSX2P35548 RNU2-41P-201ENST00000410991 178 ntBASIC5.2□□□□□ -1.58
MSX2P35548 AC068533.2-201ENST00000411872 306 ntBASIC5.2□□□□□ -1.58
MSX2P35548 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC5.2□□□□□ -1.58
MSX2P35548 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC5.2□□□□□ -1.58
MSX2P35548 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC5.2□□□□□ -1.58
MSX2P35548 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC5.2□□□□□ -1.58
MSX2P35548 AC007161.1-204ENST00000423039 460 ntBASIC5.2□□□□□ -1.58
MSX2P35548 TRIM60P10Y-201ENST00000425589 751 ntBASIC5.2□□□□□ -1.58
MSX2P35548 OFD1P12Y-201ENST00000427963 1207 ntBASIC5.2□□□□□ -1.58
MSX2P35548 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC5.2□□□□□ -1.58
MSX2P35548 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
MSX2P35548 B3GNT2P1-201ENST00000434960 952 ntBASIC5.2□□□□□ -1.58
MSX2P35548 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC5.2□□□□□ -1.58
MSX2P35548 TRIM60P8Y-201ENST00000436338 762 ntBASIC5.2□□□□□ -1.58
MSX2P35548 TUBB4BP6-201ENST00000437576 479 ntBASIC5.2□□□□□ -1.58
MSX2P35548 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC5.2□□□□□ -1.58
MSX2P35548 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC5.2□□□□□ -1.58
MSX2P35548 MTCO3P18-201ENST00000440206 761 ntBASIC5.2□□□□□ -1.58
MSX2P35548 AC007383.1-201ENST00000445875 636 ntBASIC5.2□□□□□ -1.58
MSX2P35548 AC022431.1-201ENST00000450941 438 ntBASIC5.2□□□□□ -1.58
MSX2P35548 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC5.2□□□□□ -1.58
MSX2P35548 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC5.2□□□□□ -1.58
MSX2P35548 AC092001.1-201ENST00000453012 261 ntBASIC5.2□□□□□ -1.58
MSX2P35548 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
MSX2P35548 ARPC3P2-201ENST00000457786 533 ntBASIC5.2□□□□□ -1.58
MSX2P35548 RNU7-27P-201ENST00000459281 62 ntBASIC5.2□□□□□ -1.58
MSX2P35548 AC021660.1-201ENST00000465006 554 ntBASIC5.2□□□□□ -1.58
MSX2P35548 AC098847.1-201ENST00000473094 348 ntBASIC5.2□□□□□ -1.58
MSX2P35548 AC090013.1-201ENST00000485147 480 ntBASIC5.2□□□□□ -1.58
MSX2P35548 AC109462.1-201ENST00000491087 368 ntBASIC5.2□□□□□ -1.58
MSX2P35548 AC023424.2-201ENST00000493479 777 ntBASIC5.2□□□□□ -1.58
MSX2P35548 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC5.2□□□□□ -1.58
MSX2P35548 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
MSX2P35548 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.2□□□□□ -1.58
MSX2P35548 AC105252.1-201ENST00000503089 286 ntBASIC5.2□□□□□ -1.58
MSX2P35548 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
MSX2P35548 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
MSX2P35548 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC5.2□□□□□ -1.58
MSX2P35548 RNU6-314P-201ENST00000516574 104 ntBASIC5.2□□□□□ -1.58
MSX2P35548 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC5.2□□□□□ -1.58
MSX2P35548 AC100784.1-201ENST00000522790 310 ntBASIC5.2□□□□□ -1.58
MSX2P35548 PCNAP4-201ENST00000532690 730 ntBASIC5.2□□□□□ -1.58
MSX2P35548 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
MSX2P35548 AC125612.1-201ENST00000547580 377 ntBASIC5.2□□□□□ -1.58
MSX2P35548 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.2□□□□□ -1.58
MSX2P35548 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC5.2□□□□□ -1.58
MSX2P35548 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC5.2□□□□□ -1.58
MSX2P35548 PCMTD1P2-201ENST00000565017 355 ntBASIC5.2□□□□□ -1.58
MSX2P35548 AC009852.2-201ENST00000567898 485 ntBASIC5.2□□□□□ -1.58
MSX2P35548 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC5.2□□□□□ -1.58
MSX2P35548 AP005403.1-201ENST00000579720 229 ntBASIC5.2□□□□□ -1.58
MSX2P35548 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC5.2□□□□□ -1.58
MSX2P35548 AC112230.1-201ENST00000604342 547 ntBASIC5.2□□□□□ -1.58
MSX2P35548 AL499605.1-201ENST00000604628 403 ntBASIC5.2□□□□□ -1.58
MSX2P35548 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC5.2□□□□□ -1.58
MSX2P35548 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
MSX2P35548 MIR6071-201ENST00000616741 78 ntBASIC5.2□□□□□ -1.58
MSX2P35548 AC006338.1-201ENST00000618453 749 ntBASIC5.2□□□□□ -1.58
MSX2P35548 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
MSX2P35548 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC5.2□□□□□ -1.58
MSX2P35548 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC5.2□□□□□ -1.58
MSX2P35548 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.2□□□□□ -1.58
MSX2P35548 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
MSX2P35548 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.2□□□□□ -1.58
MSX2P35548 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
MSX2P35548 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
MSX2P35548 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
MSX2P35548 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
MSX2P35548 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
MSX2P35548 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
MSX2P35548 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.2□□□□□ -1.58
MSX2P35548 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
MSX2P35548 AC093311.1-201ENST00000506586 2021 ntBASIC5.19□□□□□ -1.58
MSX2P35548 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.19□□□□□ -1.58
MSX2P35548 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
MSX2P35548 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
MSX2P35548 TRIM51GP-201ENST00000534741 1350 ntBASIC5.19□□□□□ -1.58
MSX2P35548 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.19□□□□□ -1.58
MSX2P35548 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
MSX2P35548 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.19□□□□□ -1.58
MSX2P35548 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
MSX2P35548 RPL21P132-201ENST00000331267 462 ntBASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms