Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 HPRT1P2-201ENST00000505250 544 ntBASIC3.1□□□□□ -1.91
HLA-DMBP28068 AC108475.1-201ENST00000507880 950 ntBASIC3.1□□□□□ -1.91
HLA-DMBP28068 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC3.1□□□□□ -1.91
HLA-DMBP28068 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC3.1□□□□□ -1.91
HLA-DMBP28068 RNU7-143P-201ENST00000516781 65 ntBASIC3.1□□□□□ -1.91
HLA-DMBP28068 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.1□□□□□ -1.91
HLA-DMBP28068 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC3.1□□□□□ -1.91
HLA-DMBP28068 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.1□□□□□ -1.91
HLA-DMBP28068 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HLA-DMBP28068 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.1□□□□□ -1.91
HLA-DMBP28068 AC012417.1-201ENST00000582307 1039 ntBASIC3.1□□□□□ -1.91
HLA-DMBP28068 AL020997.2-201ENST00000602607 184 ntBASIC3.1□□□□□ -1.91
HLA-DMBP28068 AP000255.1-201ENST00000610276 676 ntBASIC3.1□□□□□ -1.91
HLA-DMBP28068 FAM27D1-201ENST00000612308 341 ntBASIC3.1□□□□□ -1.91
HLA-DMBP28068 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC3.1□□□□□ -1.91
HLA-DMBP28068 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.1□□□□□ -1.91
HLA-DMBP28068 EXOC5P1-201ENST00000510543 1969 ntBASIC3.1□□□□□ -1.91
HLA-DMBP28068 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HLA-DMBP28068 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC3.1□□□□□ -1.91
HLA-DMBP28068 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.1□□□□□ -1.91
HLA-DMBP28068 MTND4P10-201ENST00000446199 1363 ntBASIC3.1□□□□□ -1.91
HLA-DMBP28068 NOL8P1-201ENST00000508336 3529 ntBASIC3.1□□□□□ -1.91
HLA-DMBP28068 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
HLA-DMBP28068 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.09□□□□□ -1.91
HLA-DMBP28068 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HLA-DMBP28068 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.09□□□□□ -1.91
HLA-DMBP28068 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
HLA-DMBP28068 AC116667.1-201ENST00000604855 2072 ntBASIC3.09□□□□□ -1.91
HLA-DMBP28068 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 AL121657.1-201ENST00000327215 531 ntBASIC3.09□□□□□ -1.91
HLA-DMBP28068 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 ST13P16-201ENST00000401760 781 ntBASIC3.09□□□□□ -1.91
HLA-DMBP28068 RN7SKP182-201ENST00000410772 298 ntBASIC3.09□□□□□ -1.91
HLA-DMBP28068 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HLA-DMBP28068 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 OR6K4P-201ENST00000423179 955 ntBASIC3.09□□□□□ -1.91
HLA-DMBP28068 RPS27AP12-201ENST00000429552 465 ntBASIC3.09□□□□□ -1.91
HLA-DMBP28068 COX6B1P7-201ENST00000430845 235 ntBASIC3.09□□□□□ -1.91
HLA-DMBP28068 AL358472.1-201ENST00000431295 329 ntBASIC3.09□□□□□ -1.91
HLA-DMBP28068 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 AC009963.2-201ENST00000453431 138 ntBASIC3.09□□□□□ -1.91
HLA-DMBP28068 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 RNU6-1218P-201ENST00000458990 108 ntBASIC3.09□□□□□ -1.91
HLA-DMBP28068 AL161747.1-201ENST00000480068 358 ntBASIC3.09□□□□□ -1.91
HLA-DMBP28068 AC041039.1-201ENST00000485656 536 ntBASIC3.09□□□□□ -1.91
HLA-DMBP28068 NIPA2P2-201ENST00000496376 1083 ntBASIC3.09□□□□□ -1.91
HLA-DMBP28068 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 SNORA70.14-201ENST00000516205 110 ntBASIC3.09□□□□□ -1.91
HLA-DMBP28068 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.09□□□□□ -1.91
HLA-DMBP28068 MIR2116-201ENST00000517221 80 ntBASIC3.09□□□□□ -1.91
HLA-DMBP28068 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 AP003730.1-201ENST00000524605 285 ntBASIC3.09□□□□□ -1.91
HLA-DMBP28068 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 AC087888.1-201ENST00000550884 1254 ntBASIC3.09□□□□□ -1.91
HLA-DMBP28068 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 AL161729.3-201ENST00000603533 673 ntBASIC3.09□□□□□ -1.91
HLA-DMBP28068 AC104662.1-201ENST00000604448 511 ntBASIC3.09□□□□□ -1.91
HLA-DMBP28068 AC114878.2-201ENST00000604863 1251 ntBASIC3.09□□□□□ -1.91
HLA-DMBP28068 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HLA-DMBP28068 AC068724.3-201ENST00000625906 87 ntBASIC3.09□□□□□ -1.91
HLA-DMBP28068 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC3.09□□□□□ -1.91
HLA-DMBP28068 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
HLA-DMBP28068 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HLA-DMBP28068 ERCC6-202ENST00000374127 1782 ntBASIC3.09□□□□□ -1.91
HLA-DMBP28068 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC3.09□□□□□ -1.92
HLA-DMBP28068 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
HLA-DMBP28068 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC3.09□□□□□ -1.92
HLA-DMBP28068 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.92
HLA-DMBP28068 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.09□□□□□ -1.92
HLA-DMBP28068 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.09□□□□□ -1.92
HLA-DMBP28068 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.09□□□□□ -1.92
HLA-DMBP28068 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
HLA-DMBP28068 FTO-203ENST00000460382 1517 ntTSL 5 BASIC3.09□□□□□ -1.92
HLA-DMBP28068 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
HLA-DMBP28068 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
HLA-DMBP28068 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
HLA-DMBP28068 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
HLA-DMBP28068 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.08□□□□□ -1.92
HLA-DMBP28068 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC3.08□□□□□ -1.92
HLA-DMBP28068 XIAPP3-201ENST00000312918 795 ntBASIC3.08□□□□□ -1.92
HLA-DMBP28068 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms