Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.24□□□□□ -1.73
SDC3O75056 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.24□□□□□ -1.73
SDC3O75056 AC010683.1-201ENST00000473673 378 ntBASIC4.24□□□□□ -1.73
SDC3O75056 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.24□□□□□ -1.73
SDC3O75056 RN7SL817P-201ENST00000480777 288 ntBASIC4.24□□□□□ -1.73
SDC3O75056 AC011037.1-201ENST00000483964 558 ntBASIC4.24□□□□□ -1.73
SDC3O75056 RPL21P129-201ENST00000491732 478 ntBASIC4.24□□□□□ -1.73
SDC3O75056 AL132838.2-201ENST00000492041 314 ntBASIC4.24□□□□□ -1.73
SDC3O75056 RN7SL812P-201ENST00000493791 279 ntBASIC4.24□□□□□ -1.73
SDC3O75056 RPS27AP13-201ENST00000498403 237 ntBASIC4.24□□□□□ -1.73
SDC3O75056 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC4.24□□□□□ -1.73
SDC3O75056 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC4.24□□□□□ -1.73
SDC3O75056 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.24□□□□□ -1.73
SDC3O75056 AC020593.1-201ENST00000507399 299 ntBASIC4.24□□□□□ -1.73
SDC3O75056 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC4.24□□□□□ -1.73
SDC3O75056 AC103833.1-201ENST00000517442 172 ntBASIC4.24□□□□□ -1.73
SDC3O75056 AC023632.4-201ENST00000517783 191 ntBASIC4.24□□□□□ -1.73
SDC3O75056 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC4.24□□□□□ -1.73
SDC3O75056 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
SDC3O75056 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.24□□□□□ -1.73
SDC3O75056 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.24□□□□□ -1.73
SDC3O75056 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.24□□□□□ -1.73
SDC3O75056 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
SDC3O75056 AC084757.1-201ENST00000559987 490 ntBASIC4.24□□□□□ -1.73
SDC3O75056 VN1R84P-201ENST00000593697 235 ntBASIC4.24□□□□□ -1.73
SDC3O75056 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
SDC3O75056 AC008966.2-201ENST00000606157 453 ntBASIC4.24□□□□□ -1.73
SDC3O75056 AC026979.4-201ENST00000606555 645 ntBASIC4.24□□□□□ -1.73
SDC3O75056 MIR6867-201ENST00000610636 67 ntBASIC4.24□□□□□ -1.73
SDC3O75056 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
SDC3O75056 AC123768.4-201ENST00000616244 701 ntBASIC4.24□□□□□ -1.73
SDC3O75056 CFTRP2-201ENST00000634304 199 ntBASIC4.24□□□□□ -1.73
SDC3O75056 AC055839.1-201ENST00000634467 498 ntBASIC4.24□□□□□ -1.73
SDC3O75056 METTL8-219ENST00000640734 726 ntTSL 2 BASIC4.24□□□□□ -1.73
SDC3O75056 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
SDC3O75056 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.24□□□□□ -1.73
SDC3O75056 IQCB2P-201ENST00000401788 1633 ntBASIC4.24□□□□□ -1.73
SDC3O75056 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
SDC3O75056 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.24□□□□□ -1.73
SDC3O75056 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.24□□□□□ -1.73
SDC3O75056 KPNA2P2-201ENST00000419546 1489 ntBASIC4.24□□□□□ -1.73
SDC3O75056 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
SDC3O75056 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
SDC3O75056 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SDC3O75056 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
SDC3O75056 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
SDC3O75056 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.23□□□□□ -1.73
SDC3O75056 AC018529.3-201ENST00000624212 2254 ntBASIC4.23□□□□□ -1.73
SDC3O75056 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.23□□□□□ -1.73
SDC3O75056 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SDC3O75056 RNA5SP130-201ENST00000364431 114 ntBASIC4.23□□□□□ -1.73
SDC3O75056 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SDC3O75056 MIR708-201ENST00000390708 88 ntBASIC4.23□□□□□ -1.73
SDC3O75056 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC4.23□□□□□ -1.73
SDC3O75056 PPIAP31-201ENST00000405422 495 ntBASIC4.23□□□□□ -1.73
SDC3O75056 RN7SKP235-201ENST00000410662 305 ntBASIC4.23□□□□□ -1.73
SDC3O75056 AL160275.2-201ENST00000412010 394 ntBASIC4.23□□□□□ -1.73
SDC3O75056 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.23□□□□□ -1.73
SDC3O75056 IPMKP1-201ENST00000425988 855 ntBASIC4.23□□□□□ -1.73
SDC3O75056 RPL7P2-201ENST00000427639 268 ntBASIC4.23□□□□□ -1.73
SDC3O75056 RPL21P91-201ENST00000429231 479 ntBASIC4.23□□□□□ -1.73
SDC3O75056 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.23□□□□□ -1.73
SDC3O75056 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC4.23□□□□□ -1.73
SDC3O75056 BMS1P19-201ENST00000433925 393 ntBASIC4.23□□□□□ -1.73
SDC3O75056 MED6P1-201ENST00000439659 713 ntBASIC4.23□□□□□ -1.73
SDC3O75056 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC4.23□□□□□ -1.73
SDC3O75056 AL162151.2-201ENST00000448875 158 ntBASIC4.23□□□□□ -1.73
SDC3O75056 AL353718.1-201ENST00000451028 517 ntBASIC4.23□□□□□ -1.73
SDC3O75056 RPS20P4-201ENST00000461659 355 ntBASIC4.23□□□□□ -1.73
SDC3O75056 RPL5P30-201ENST00000465511 891 ntBASIC4.23□□□□□ -1.73
SDC3O75056 SAP18P1-201ENST00000512058 390 ntBASIC4.23□□□□□ -1.73
SDC3O75056 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC4.23□□□□□ -1.73
SDC3O75056 RGS5-218ENST00000526176 574 ntTSL 4 BASIC4.23□□□□□ -1.73
SDC3O75056 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.23□□□□□ -1.73
SDC3O75056 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.23□□□□□ -1.73
SDC3O75056 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.23□□□□□ -1.73
SDC3O75056 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC4.23□□□□□ -1.73
SDC3O75056 CBX3P2-202ENST00000583365 535 ntBASIC4.23□□□□□ -1.73
SDC3O75056 AC135178.6-201ENST00000605314 398 ntBASIC4.23□□□□□ -1.73
SDC3O75056 AL021997.2-201ENST00000615674 271 ntBASIC4.23□□□□□ -1.73
SDC3O75056 AC091905.2-201ENST00000623143 306 ntBASIC4.23□□□□□ -1.73
SDC3O75056 FP325313.1-201ENST00000638228 703 ntBASIC4.23□□□□□ -1.73
SDC3O75056 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.23□□□□□ -1.73
SDC3O75056 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
SDC3O75056 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
SDC3O75056 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
SDC3O75056 RNU1-14P-201ENST00000362759 152 ntBASIC4.22□□□□□ -1.73
SDC3O75056 MIR195-201ENST00000385194 87 ntBASIC4.22□□□□□ -1.73
SDC3O75056 AL356057.1-202ENST00000402263 756 ntBASIC4.22□□□□□ -1.73
SDC3O75056 AL353692.2-201ENST00000407054 335 ntBASIC4.22□□□□□ -1.73
SDC3O75056 AC010385.1-201ENST00000412374 256 ntBASIC4.22□□□□□ -1.73
SDC3O75056 AL357078.2-201ENST00000416486 427 ntBASIC4.22□□□□□ -1.73
SDC3O75056 AL356095.1-201ENST00000417217 199 ntBASIC4.22□□□□□ -1.73
SDC3O75056 AL157831.1-201ENST00000426134 473 ntBASIC4.22□□□□□ -1.73
SDC3O75056 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.22□□□□□ -1.73
SDC3O75056 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SDC3O75056 RPL23AP25-201ENST00000430973 463 ntBASIC4.22□□□□□ -1.73
SDC3O75056 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.22□□□□□ -1.73
SDC3O75056 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.22□□□□□ -1.73
SDC3O75056 Z95327.1-201ENST00000446082 482 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms