Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AC109446.4-201ENST00000623235 2755 ntBASIC5.31□□□□□ -1.56
TDP1Q9NUW8 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AL512646.1-201ENST00000269395 1077 ntBASIC5.31□□□□□ -1.56
TDP1Q9NUW8 RN7SKP113-201ENST00000363891 295 ntBASIC5.31□□□□□ -1.56
TDP1Q9NUW8 SNORA66-201ENST00000384792 133 ntBASIC5.31□□□□□ -1.56
TDP1Q9NUW8 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 RNU6-272P-201ENST00000411028 104 ntBASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AC234782.4-201ENST00000417646 1048 ntBASIC5.31□□□□□ -1.56
TDP1Q9NUW8 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 SKP1P3-201ENST00000429280 487 ntBASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 RPS27AP15-201ENST00000447672 466 ntBASIC5.31□□□□□ -1.56
TDP1Q9NUW8 RPL7P1-201ENST00000468161 747 ntBASIC5.31□□□□□ -1.56
TDP1Q9NUW8 RPL7P9-201ENST00000468715 747 ntBASIC5.31□□□□□ -1.56
TDP1Q9NUW8 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 RPS6P4-201ENST00000494693 758 ntBASIC5.31□□□□□ -1.56
TDP1Q9NUW8 SETP14-201ENST00000497538 873 ntBASIC5.31□□□□□ -1.56
TDP1Q9NUW8 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AC008885.2-201ENST00000509506 930 ntBASIC5.31□□□□□ -1.56
TDP1Q9NUW8 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AP001189.2-201ENST00000527320 189 ntBASIC5.31□□□□□ -1.56
TDP1Q9NUW8 RGS4-207ENST00000527809 817 ntTSL 4 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AC021006.3-201ENST00000530771 192 ntBASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AC018552.1-201ENST00000562099 811 ntBASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AC011260.1-201ENST00000578420 472 ntBASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AC115085.1-201ENST00000588924 229 ntBASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AC105254.2-201ENST00000603636 436 ntBASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 HSPA8P14-201ENST00000552265 1805 ntBASIC5.31□□□□□ -1.56
TDP1Q9NUW8 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AC010266.2-201ENST00000564741 3255 ntBASIC5.31□□□□□ -1.56
TDP1Q9NUW8 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 MTND4P34-201ENST00000572715 1371 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC011477.1-204ENST00000623416 1325 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 GNAS-202ENST00000306090 477 ntTSL 5 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 RNA5SP453-201ENST00000362503 119 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 RNA5SP87-201ENST00000384155 118 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 RNU6-253P-201ENST00000384730 105 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 RNU6-920P-201ENST00000410926 92 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 NPM1P11-201ENST00000417106 855 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 MRPS21P2-201ENST00000424704 264 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 TEX41-205ENST00000431734 529 ntTSL 4 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC138761.5-201ENST00000433967 325 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC008072.1-201ENST00000434254 824 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AL590103.1-201ENST00000434488 307 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 PPIAP13-201ENST00000434706 478 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AL591363.1-201ENST00000450091 483 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 SUN3-208ENST00000453192 801 ntTSL 5 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 RN7SL197P-201ENST00000466981 299 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC010307.1-201ENST00000467206 836 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC097173.1-201ENST00000505862 819 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 BTF3P13-201ENST00000513224 490 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms