Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC108751.2-201ENST00000469993 231 ntBASIC3.58□□□□□ -1.84
VPS13AQ96RL7 AC093815.1-201ENST00000508637 280 ntBASIC3.58□□□□□ -1.84
VPS13AQ96RL7 SNORA70.18-201ENST00000516696 98 ntBASIC3.58□□□□□ -1.84
VPS13AQ96RL7 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS13AQ96RL7 AL121603.1-201ENST00000553815 142 ntBASIC3.58□□□□□ -1.84
VPS13AQ96RL7 AC005476.1-201ENST00000554427 397 ntBASIC3.58□□□□□ -1.84
VPS13AQ96RL7 AC103881.1-201ENST00000603476 538 ntBASIC3.58□□□□□ -1.84
VPS13AQ96RL7 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS13AQ96RL7 AC005086.4-201ENST00000623065 213 ntBASIC3.58□□□□□ -1.84
VPS13AQ96RL7 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
VPS13AQ96RL7 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC3.58□□□□□ -1.84
VPS13AQ96RL7 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
VPS13AQ96RL7 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
VPS13AQ96RL7 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC3.58□□□□□ -1.84
VPS13AQ96RL7 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC3.58□□□□□ -1.84
VPS13AQ96RL7 NHLRC2-201ENST00000369301 11051 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
VPS13AQ96RL7 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 AL358178.1-201ENST00000407698 397 ntBASIC3.57□□□□□ -1.84
VPS13AQ96RL7 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 HSPE1P27-201ENST00000430808 296 ntBASIC3.57□□□□□ -1.84
VPS13AQ96RL7 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 AC007599.1-201ENST00000568688 1174 ntBASIC3.57□□□□□ -1.84
VPS13AQ96RL7 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 AL163642.2-201ENST00000604722 1019 ntBASIC3.57□□□□□ -1.84
VPS13AQ96RL7 AC026368.1-201ENST00000614934 690 ntBASIC3.57□□□□□ -1.84
VPS13AQ96RL7 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 AL132656.3-201ENST00000606384 1595 ntBASIC3.57□□□□□ -1.84
VPS13AQ96RL7 PGBD4P8-201ENST00000412993 562 ntBASIC3.57□□□□□ -1.84
VPS13AQ96RL7 RPS23P10-201ENST00000416185 486 ntBASIC3.57□□□□□ -1.84
VPS13AQ96RL7 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 AL117339.4-201ENST00000608335 7063 ntBASIC3.57□□□□□ -1.84
VPS13AQ96RL7 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS13AQ96RL7 LINC00561-201ENST00000565815 2738 ntBASIC3.56□□□□□ -1.84
VPS13AQ96RL7 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS13AQ96RL7 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS13AQ96RL7 SNORA5B-201ENST00000363786 132 ntBASIC3.56□□□□□ -1.84
VPS13AQ96RL7 RPF2P1-201ENST00000424137 906 ntBASIC3.56□□□□□ -1.84
VPS13AQ96RL7 RPL23AP25-201ENST00000430973 463 ntBASIC3.56□□□□□ -1.84
VPS13AQ96RL7 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS13AQ96RL7 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS13AQ96RL7 AC090151.1-201ENST00000520784 730 ntBASIC3.56□□□□□ -1.84
VPS13AQ96RL7 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS13AQ96RL7 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS13AQ96RL7 BMS1P21-201ENST00000634565 365 ntBASIC3.56□□□□□ -1.84
VPS13AQ96RL7 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
VPS13AQ96RL7 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC3.56□□□□□ -1.84
VPS13AQ96RL7 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS13AQ96RL7 AC010266.2-201ENST00000564741 3255 ntBASIC3.56□□□□□ -1.84
VPS13AQ96RL7 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
VPS13AQ96RL7 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC3.56□□□□□ -1.84
VPS13AQ96RL7 GABRB3-216ENST00000628124 5581 ntTSL 2 BASIC3.56□□□□□ -1.84
VPS13AQ96RL7 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS13AQ96RL7 AL136360.1-201ENST00000503377 1900 ntBASIC3.56□□□□□ -1.84
VPS13AQ96RL7 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS13AQ96RL7 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS13AQ96RL7 SNORA54-201ENST00000384281 123 ntBASIC3.56□□□□□ -1.84
VPS13AQ96RL7 BX890604.2-201ENST00000427883 474 ntBASIC3.56□□□□□ -1.84
VPS13AQ96RL7 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS13AQ96RL7 VN1R104P-201ENST00000505115 1009 ntBASIC3.56□□□□□ -1.84
VPS13AQ96RL7 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS13AQ96RL7 OR5M7P-201ENST00000526140 972 ntBASIC3.56□□□□□ -1.84
VPS13AQ96RL7 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.56□□□□□ -1.84
VPS13AQ96RL7 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS13AQ96RL7 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS13AQ96RL7 DHX9P1-201ENST00000436565 3076 ntBASIC3.56□□□□□ -1.84
VPS13AQ96RL7 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS13AQ96RL7 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS13AQ96RL7 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 SNORA71B-202ENST00000439232 272 ntBASIC3.55□□□□□ -1.84
VPS13AQ96RL7 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 RNA5SP341-201ENST00000516261 117 ntBASIC3.55□□□□□ -1.84
VPS13AQ96RL7 AC090286.3-201ENST00000573133 187 ntBASIC3.55□□□□□ -1.84
VPS13AQ96RL7 AC026422.1-201ENST00000623961 452 ntBASIC3.55□□□□□ -1.84
VPS13AQ96RL7 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 SRP72P2-201ENST00000344851 1979 ntBASIC3.55□□□□□ -1.84
VPS13AQ96RL7 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 AC107083.1-201ENST00000439643 279 ntBASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms