Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AC093156.1-201ENST00000440382 670 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AP000281.1-201ENST00000444036 316 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AC009518.1-201ENST00000452219 559 ntTSL 4 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AC078785.3-201ENST00000476607 425 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AC023818.1-201ENST00000498379 384 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AC139783.2-201ENST00000504847 1145 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 PCBP2P3-201ENST00000509726 843 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 PANCR-202ENST00000513690 448 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AC010809.1-201ENST00000560268 562 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 PPIAL4A-201ENST00000577856 660 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AC018638.8-201ENST00000588755 281 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AL451044.1-201ENST00000604867 238 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 IGKV2OR2-10-201ENST00000613976 311 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 uc_338.12-201ENST00000616344 181 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 U1.41-201ENST00000617626 165 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AP001264.1-201ENST00000620602 703 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AC138649.5-201ENST00000637456 137 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 GTDC1-212ENST00000463875 1563 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AL731556.1-201ENST00000394628 3711 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 GNL2P1-201ENST00000451274 2190 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 AXDND1-214ENST00000617277 3405 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 ZNF480-201ENST00000334564 1843 ntAPPRIS ALT2 TSL 2 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 DMD-202ENST00000343523 5623 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 Y_RNA.72-201ENST00000362894 103 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 RNU6-178P-201ENST00000384631 104 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 MT-TC-201ENST00000387405 66 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 U3.29-201ENST00000391296 212 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 CYCSP10-201ENST00000417973 294 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 AP006748.1-201ENST00000418874 346 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 SDCBPP3-201ENST00000419629 891 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 AC008850.1-201ENST00000427546 362 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 CBWD4P-201ENST00000445695 655 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 Z95327.1-201ENST00000446082 482 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 EIF4A1P6-201ENST00000448133 1210 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 AC002553.2-201ENST00000453217 340 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 NANOGP10-201ENST00000453325 895 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 AC053481.1-201ENST00000467217 306 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 RN7SL83P-201ENST00000468131 297 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 RAB7A-208ENST00000493186 329 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 AL139099.1-201ENST00000497398 403 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 GAPDHP56-201ENST00000506031 988 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 AC016559.2-201ENST00000510759 359 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 RNU6-798P-201ENST00000516912 103 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 FBXO16-208ENST00000519471 398 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 LINC02237-201ENST00000521753 805 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 AF235103.1-201ENST00000530223 439 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 ASB8-207ENST00000536953 923 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 AL096869.1-201ENST00000557622 559 ntTSL 4 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 AP3S2-214ENST00000560940 519 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 MIR4716-201ENST00000579628 84 ntBASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms