Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC063943.1-201ENST00000465434 453 ntBASIC4.55□□□□□ -1.68
VMP1Q96GC9 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VMP1Q96GC9 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.55□□□□□ -1.68
VMP1Q96GC9 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC4.55□□□□□ -1.68
VMP1Q96GC9 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC4.55□□□□□ -1.68
VMP1Q96GC9 SOD1P3-201ENST00000518682 454 ntBASIC4.55□□□□□ -1.68
VMP1Q96GC9 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.55□□□□□ -1.68
VMP1Q96GC9 AF279873.1-201ENST00000523393 313 ntBASIC4.55□□□□□ -1.68
VMP1Q96GC9 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
VMP1Q96GC9 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC4.55□□□□□ -1.68
VMP1Q96GC9 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC4.55□□□□□ -1.68
VMP1Q96GC9 AP000916.1-201ENST00000533869 835 ntBASIC4.55□□□□□ -1.68
VMP1Q96GC9 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VMP1Q96GC9 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC4.55□□□□□ -1.68
VMP1Q96GC9 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC4.55□□□□□ -1.68
VMP1Q96GC9 MIR3667-201ENST00000581025 74 ntBASIC4.55□□□□□ -1.68
VMP1Q96GC9 MIR4480-201ENST00000582492 71 ntBASIC4.55□□□□□ -1.68
VMP1Q96GC9 MIR4737-201ENST00000583979 81 ntBASIC4.55□□□□□ -1.68
VMP1Q96GC9 AC017100.2-201ENST00000584628 355 ntBASIC4.55□□□□□ -1.68
VMP1Q96GC9 VN1R88P-201ENST00000596787 292 ntBASIC4.55□□□□□ -1.68
VMP1Q96GC9 AC008687.2-201ENST00000597865 520 ntBASIC4.55□□□□□ -1.68
VMP1Q96GC9 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.55□□□□□ -1.68
VMP1Q96GC9 AC005972.3-201ENST00000606304 481 ntBASIC4.55□□□□□ -1.68
VMP1Q96GC9 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.55□□□□□ -1.68
VMP1Q96GC9 AC100827.5-201ENST00000615883 426 ntBASIC4.55□□□□□ -1.68
VMP1Q96GC9 SAMMSON-226ENST00000642089 1582 ntBASIC4.55□□□□□ -1.68
VMP1Q96GC9 MTND5P3-201ENST00000438536 1800 ntBASIC4.55□□□□□ -1.68
VMP1Q96GC9 AC092435.4-201ENST00000623012 4159 ntBASIC4.55□□□□□ -1.68
VMP1Q96GC9 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VMP1Q96GC9 AC107081.3-201ENST00000612715 2034 ntBASIC4.55□□□□□ -1.68
VMP1Q96GC9 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.55□□□□□ -1.68
VMP1Q96GC9 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.54□□□□□ -1.68
VMP1Q96GC9 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VMP1Q96GC9 AC068254.2-201ENST00000623938 3577 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VMP1Q96GC9 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.54□□□□□ -1.68
VMP1Q96GC9 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VMP1Q96GC9 AC008758.3-201ENST00000507003 1829 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 AC027290.2-201ENST00000623210 18662 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 RNA5SP167-201ENST00000365461 116 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 RNA5SP87-201ENST00000384155 118 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VMP1Q96GC9 AL080315.1-201ENST00000406055 466 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.54□□□□□ -1.68
VMP1Q96GC9 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC4.54□□□□□ -1.68
VMP1Q96GC9 AL360081.1-201ENST00000428299 555 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC4.54□□□□□ -1.68
VMP1Q96GC9 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.54□□□□□ -1.68
VMP1Q96GC9 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC4.54□□□□□ -1.68
VMP1Q96GC9 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.54□□□□□ -1.68
VMP1Q96GC9 RPL17P35-201ENST00000432217 549 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 AC092162.1-201ENST00000432828 434 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 AC008072.1-201ENST00000434254 824 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 AL590762.3-201ENST00000436372 640 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 YWHAZP8-201ENST00000436935 731 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 RPS26P30-201ENST00000443431 335 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 Z77249.1-201ENST00000444622 1175 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC4.54□□□□□ -1.68
VMP1Q96GC9 AC000111.2-201ENST00000448200 210 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 OR1H1P-201ENST00000448731 937 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 AURKAPS2-201ENST00000454983 333 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 TVP23BP2-201ENST00000455082 615 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 RPL23AP56-201ENST00000460778 453 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 RN7SL517P-201ENST00000462240 305 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.54□□□□□ -1.68
VMP1Q96GC9 RPS23P1-201ENST00000491662 432 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.54□□□□□ -1.68
VMP1Q96GC9 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.54□□□□□ -1.68
VMP1Q96GC9 KRT19P6-201ENST00000510983 209 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.54□□□□□ -1.68
VMP1Q96GC9 MIR4504-201ENST00000577413 92 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC4.54□□□□□ -1.68
VMP1Q96GC9 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC4.54□□□□□ -1.68
VMP1Q96GC9 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC4.54□□□□□ -1.68
VMP1Q96GC9 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.54□□□□□ -1.68
VMP1Q96GC9 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.54□□□□□ -1.68
VMP1Q96GC9 BNIP3P4-201ENST00000604946 565 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 AC010424.2-201ENST00000607594 443 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 VN1R9P-201ENST00000614184 867 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC4.54□□□□□ -1.68
VMP1Q96GC9 AC020978.9-201ENST00000624380 1141 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.54□□□□□ -1.68
VMP1Q96GC9 AC055839.1-201ENST00000634467 498 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.54□□□□□ -1.68
VMP1Q96GC9 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VMP1Q96GC9 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VMP1Q96GC9 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC4.54□□□□□ -1.68
VMP1Q96GC9 AL359922.3-201ENST00000624779 1670 ntBASIC4.54□□□□□ -1.68
VMP1Q96GC9 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VMP1Q96GC9 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.54□□□□□ -1.68
VMP1Q96GC9 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.54□□□□□ -1.68
VMP1Q96GC9 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VMP1Q96GC9 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VMP1Q96GC9 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VMP1Q96GC9 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
VMP1Q96GC9 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
VMP1Q96GC9 MAPK10-372ENST00000641954 3413 ntBASIC4.53□□□□□ -1.68
VMP1Q96GC9 MTND5P28-201ENST00000438005 1594 ntBASIC4.53□□□□□ -1.68
VMP1Q96GC9 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VMP1Q96GC9 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms