Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 AC008033.1-201ENST00000216407 1162 ntBASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 SPRR2C-201ENST00000290702 219 ntBASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 MIR1303-201ENST00000408625 86 ntBASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 EIF4A1P1-201ENST00000420241 934 ntBASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 AL132765.1-201ENST00000434165 553 ntBASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 OR4C10P-201ENST00000434991 931 ntBASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 RPL23AP71-201ENST00000470966 469 ntBASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 RN7SKP82-201ENST00000516786 223 ntBASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 RGS5-218ENST00000526176 574 ntTSL 4 BASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 AC022882.1-201ENST00000532142 501 ntBASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 BPIFA4P-203ENST00000603168 689 ntBASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 AC099676.1-201ENST00000608886 657 ntBASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 AC006946.3-201ENST00000609791 756 ntBASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 AC097505.1-201ENST00000610199 565 ntBASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 DLEU1_1.1-201ENST00000618107 190 ntBASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 AL356863.1-201ENST00000623378 1080 ntBASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 OR10J6P-201ENST00000289731 930 ntBASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 MIR383-201ENST00000362257 73 ntBASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 MIR331-201ENST00000362302 94 ntBASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 RNU1-83P-201ENST00000363426 164 ntBASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 RN7SKP280-201ENST00000364196 304 ntBASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 RNU1-13P-201ENST00000384499 162 ntBASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 MTATP6P31-201ENST00000406985 692 ntBASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 RNA5SP317-201ENST00000410176 116 ntBASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 RNA5SP311-201ENST00000411290 116 ntBASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 SCP2-206ENST00000430330 938 ntTSL 2 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 PTP4A1P3-201ENST00000433661 420 ntBASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 RPS15AP29-201ENST00000445539 400 ntBASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 DHFRP3-201ENST00000455595 559 ntBASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 RNA5SP497-201ENST00000516081 97 ntBASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 RNA5SP315-201ENST00000516340 116 ntBASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 RNA5SP312-201ENST00000517068 116 ntBASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 COX6B1P6-201ENST00000522347 255 ntBASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 AC093014.1-201ENST00000548926 724 ntBASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 AC113403.1-201ENST00000604910 193 ntBASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 COX6CP4-201ENST00000605798 228 ntBASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 AC090506.2-201ENST00000624521 419 ntBASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 RNA5SP196-201ENST00000625967 102 ntBASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 MIR492-201ENST00000638676 116 ntBASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
HDDC3Q8N4P3 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC4.46□□□□□ -1.69
HDDC3Q8N4P3 AC139769.1-204ENST00000472297 1931 ntBASIC4.46□□□□□ -1.69
HDDC3Q8N4P3 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 MIR670-201ENST00000390142 98 ntBASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 HNRNPDP2-201ENST00000406475 478 ntBASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 FCF1P5-201ENST00000406490 482 ntBASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 141.1 ms