Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 RBMY1KP-201ENST00000423480 476 ntBASIC2.28□□□□□ -2.04
HSPG2P98160 FABP3P2-201ENST00000453169 399 ntBASIC2.28□□□□□ -2.04
HSPG2P98160 AC090602.1-201ENST00000469695 252 ntBASIC2.28□□□□□ -2.04
HSPG2P98160 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC2.28□□□□□ -2.04
HSPG2P98160 VN1R104P-201ENST00000505115 1009 ntBASIC2.28□□□□□ -2.04
HSPG2P98160 OR5M7P-201ENST00000526140 972 ntBASIC2.28□□□□□ -2.04
HSPG2P98160 AC007066.2-202ENST00000566531 914 ntBASIC2.28□□□□□ -2.04
HSPG2P98160 AC023509.5-201ENST00000617434 807 ntBASIC2.28□□□□□ -2.04
HSPG2P98160 AC095038.2-201ENST00000621464 1070 ntBASIC2.28□□□□□ -2.04
HSPG2P98160 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
HSPG2P98160 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
HSPG2P98160 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC2.28□□□□□ -2.04
HSPG2P98160 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
HSPG2P98160 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
HSPG2P98160 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC2.28□□□□□ -2.04
HSPG2P98160 ZNF90P1-201ENST00000480493 1951 ntBASIC2.28□□□□□ -2.04
HSPG2P98160 RN7SKP186-201ENST00000365371 303 ntBASIC2.28□□□□□ -2.04
HSPG2P98160 HMGB1P37-201ENST00000439613 609 ntBASIC2.28□□□□□ -2.04
HSPG2P98160 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC2.28□□□□□ -2.04
HSPG2P98160 NPM1P28-201ENST00000492269 840 ntBASIC2.28□□□□□ -2.04
HSPG2P98160 PHBP17-201ENST00000528576 541 ntBASIC2.28□□□□□ -2.04
HSPG2P98160 RNVU1-4-201ENST00000612985 164 ntBASIC2.28□□□□□ -2.04
HSPG2P98160 AC009464.1-201ENST00000615731 469 ntBASIC2.28□□□□□ -2.04
HSPG2P98160 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC2.28□□□□□ -2.04
HSPG2P98160 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC2.28□□□□□ -2.04
HSPG2P98160 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
HSPG2P98160 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC2.28□□□□□ -2.04
HSPG2P98160 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC2.28□□□□□ -2.04
HSPG2P98160 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
HSPG2P98160 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
HSPG2P98160 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
HSPG2P98160 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
HSPG2P98160 RNA5SP293-201ENST00000410527 113 ntBASIC2.28□□□□□ -2.04
HSPG2P98160 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.28□□□□□ -2.04
HSPG2P98160 AL645931.1-201ENST00000439737 410 ntBASIC2.28□□□□□ -2.04
HSPG2P98160 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.28□□□□□ -2.04
HSPG2P98160 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2.28□□□□□ -2.04
HSPG2P98160 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC2.28□□□□□ -2.04
HSPG2P98160 AC087276.1-201ENST00000529659 480 ntBASIC2.28□□□□□ -2.04
HSPG2P98160 AC083843.3-201ENST00000623679 2186 ntBASIC2.28□□□□□ -2.04
HSPG2P98160 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC2.28□□□□□ -2.04
HSPG2P98160 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC2.28□□□□□ -2.04
HSPG2P98160 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC2.28□□□□□ -2.04
HSPG2P98160 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC2.28□□□□□ -2.04
HSPG2P98160 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC2.28□□□□□ -2.04
HSPG2P98160 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
HSPG2P98160 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC2.28□□□□□ -2.04
HSPG2P98160 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.28□□□□□ -2.04
HSPG2P98160 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC2.28□□□□□ -2.05
HSPG2P98160 VDAC1P9-201ENST00000412766 841 ntBASIC2.28□□□□□ -2.05
HSPG2P98160 AC245054.1-201ENST00000420944 258 ntBASIC2.28□□□□□ -2.05
HSPG2P98160 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC2.28□□□□□ -2.05
HSPG2P98160 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC2.28□□□□□ -2.05
HSPG2P98160 AC008885.1-201ENST00000514930 301 ntBASIC2.28□□□□□ -2.05
HSPG2P98160 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC2.28□□□□□ -2.05
HSPG2P98160 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC2.28□□□□□ -2.05
HSPG2P98160 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.28□□□□□ -2.05
HSPG2P98160 AC009303.3-201ENST00000591103 736 ntBASIC2.28□□□□□ -2.05
HSPG2P98160 AC107993.1-201ENST00000591343 684 ntBASIC2.28□□□□□ -2.05
HSPG2P98160 AL139089.1-201ENST00000620372 975 ntBASIC2.28□□□□□ -2.05
HSPG2P98160 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC2.28□□□□□ -2.05
HSPG2P98160 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
HSPG2P98160 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC2.27□□□□□ -2.05
HSPG2P98160 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
HSPG2P98160 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC2.27□□□□□ -2.05
HSPG2P98160 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
HSPG2P98160 MIR1261-201ENST00000408659 82 ntBASIC2.27□□□□□ -2.05
HSPG2P98160 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC2.27□□□□□ -2.05
HSPG2P98160 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
HSPG2P98160 RPL7P48-201ENST00000461513 746 ntBASIC2.27□□□□□ -2.05
HSPG2P98160 AC010374.2-201ENST00000512933 535 ntBASIC2.27□□□□□ -2.05
HSPG2P98160 AC018442.3-201ENST00000523025 183 ntBASIC2.27□□□□□ -2.05
HSPG2P98160 AC135001.1-201ENST00000544546 283 ntBASIC2.27□□□□□ -2.05
HSPG2P98160 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC2.27□□□□□ -2.05
HSPG2P98160 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
HSPG2P98160 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC2.27□□□□□ -2.05
HSPG2P98160 SPATA31D2P-201ENST00000429999 4388 ntBASIC2.27□□□□□ -2.05
HSPG2P98160 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.27□□□□□ -2.05
HSPG2P98160 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC2.27□□□□□ -2.05
HSPG2P98160 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC2.27□□□□□ -2.05
HSPG2P98160 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC2.27□□□□□ -2.05
HSPG2P98160 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC2.27□□□□□ -2.05
HSPG2P98160 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC2.27□□□□□ -2.05
HSPG2P98160 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
HSPG2P98160 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
HSPG2P98160 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
HSPG2P98160 BCLAF1P2-201ENST00000624956 2609 ntBASIC2.27□□□□□ -2.05
HSPG2P98160 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
HSPG2P98160 RNU4-82P-201ENST00000362443 140 ntBASIC2.27□□□□□ -2.05
HSPG2P98160 NACAP7-201ENST00000407371 609 ntBASIC2.27□□□□□ -2.05
HSPG2P98160 DBIP2-201ENST00000419076 262 ntBASIC2.27□□□□□ -2.05
HSPG2P98160 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
HSPG2P98160 AC108941.1-201ENST00000502853 530 ntBASIC2.27□□□□□ -2.05
HSPG2P98160 MORF4L2P1-201ENST00000503761 858 ntBASIC2.27□□□□□ -2.05
HSPG2P98160 IGKV2-26-201ENST00000518305 343 ntBASIC2.27□□□□□ -2.05
HSPG2P98160 AC067852.3-201ENST00000589177 561 ntBASIC2.27□□□□□ -2.05
HSPG2P98160 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
HSPG2P98160 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC2.27□□□□□ -2.05
HSPG2P98160 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
HSPG2P98160 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms