Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC5.33□□□□□ -1.56
HOXC9P31274 SCARNA14-201ENST00000516903 136 ntBASIC5.33□□□□□ -1.56
HOXC9P31274 PAICSP4-201ENST00000517543 1253 ntBASIC5.33□□□□□ -1.56
HOXC9P31274 AC008694.2-201ENST00000517591 306 ntBASIC5.33□□□□□ -1.56
HOXC9P31274 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC5.33□□□□□ -1.56
HOXC9P31274 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC5.33□□□□□ -1.56
HOXC9P31274 AC100770.1-201ENST00000532310 322 ntBASIC5.33□□□□□ -1.56
HOXC9P31274 OSBPL9P3-201ENST00000534523 595 ntBASIC5.33□□□□□ -1.56
HOXC9P31274 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC5.33□□□□□ -1.56
HOXC9P31274 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC5.33□□□□□ -1.56
HOXC9P31274 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC5.33□□□□□ -1.56
HOXC9P31274 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC5.33□□□□□ -1.56
HOXC9P31274 ZNF92P2-201ENST00000600543 1059 ntBASIC5.33□□□□□ -1.56
HOXC9P31274 AC135178.6-201ENST00000605314 398 ntBASIC5.33□□□□□ -1.56
HOXC9P31274 MIR432-201ENST00000606207 94 ntBASIC5.33□□□□□ -1.56
HOXC9P31274 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC5.33□□□□□ -1.56
HOXC9P31274 AC073530.2-201ENST00000623987 261 ntBASIC5.33□□□□□ -1.56
HOXC9P31274 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC5.33□□□□□ -1.56
HOXC9P31274 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC5.33□□□□□ -1.56
HOXC9P31274 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
HOXC9P31274 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
HOXC9P31274 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC5.33□□□□□ -1.56
HOXC9P31274 AP000432.2-201ENST00000624164 2048 ntBASIC5.33□□□□□ -1.56
HOXC9P31274 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
HOXC9P31274 ZNF285B-201ENST00000561698 1767 ntBASIC5.32□□□□□ -1.56
HOXC9P31274 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC5.32□□□□□ -1.56
HOXC9P31274 NPM1P37-201ENST00000403105 874 ntBASIC5.32□□□□□ -1.56
HOXC9P31274 SNORA57.3-201ENST00000411095 141 ntBASIC5.32□□□□□ -1.56
HOXC9P31274 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC5.32□□□□□ -1.56
HOXC9P31274 Z97055.1-201ENST00000419730 712 ntBASIC5.32□□□□□ -1.56
HOXC9P31274 PTP4A1P1-201ENST00000420539 515 ntBASIC5.32□□□□□ -1.56
HOXC9P31274 AC013410.2-201ENST00000422627 201 ntBASIC5.32□□□□□ -1.56
HOXC9P31274 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.32□□□□□ -1.56
HOXC9P31274 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC5.32□□□□□ -1.56
HOXC9P31274 AC098583.1-201ENST00000480875 255 ntBASIC5.32□□□□□ -1.56
HOXC9P31274 HMGN1P15-201ENST00000513870 295 ntBASIC5.32□□□□□ -1.56
HOXC9P31274 RN7SKP34-201ENST00000516142 244 ntBASIC5.32□□□□□ -1.56
HOXC9P31274 AC007991.1-201ENST00000522680 631 ntBASIC5.32□□□□□ -1.56
HOXC9P31274 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC5.32□□□□□ -1.56
HOXC9P31274 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
HOXC9P31274 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC5.32□□□□□ -1.56
HOXC9P31274 AC093510.2-201ENST00000562820 896 ntBASIC5.32□□□□□ -1.56
HOXC9P31274 AC015911.5-201ENST00000587076 451 ntBASIC5.32□□□□□ -1.56
HOXC9P31274 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC5.32□□□□□ -1.56
HOXC9P31274 SNX6P1-201ENST00000601728 1224 ntBASIC5.32□□□□□ -1.56
HOXC9P31274 AC002069.2-201ENST00000603580 883 ntBASIC5.32□□□□□ -1.56
HOXC9P31274 AL096803.3-201ENST00000609032 532 ntBASIC5.32□□□□□ -1.56
HOXC9P31274 AC069200.1-201ENST00000609511 323 ntBASIC5.32□□□□□ -1.56
HOXC9P31274 AC244100.1-202ENST00000621554 382 ntBASIC5.32□□□□□ -1.56
HOXC9P31274 MIR7702-201ENST00000621931 59 ntBASIC5.32□□□□□ -1.56
HOXC9P31274 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC5.32□□□□□ -1.56
HOXC9P31274 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC5.32□□□□□ -1.56
HOXC9P31274 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.32□□□□□ -1.56
HOXC9P31274 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
HOXC9P31274 AC126323.6-202ENST00000568092 3511 ntBASIC5.32□□□□□ -1.56
HOXC9P31274 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
HOXC9P31274 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HOXC9P31274 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
HOXC9P31274 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HOXC9P31274 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC5.31□□□□□ -1.56
HOXC9P31274 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXC9P31274 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HOXC9P31274 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HOXC9P31274 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HOXC9P31274 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HOXC9P31274 SNORA63.1-201ENST00000362493 131 ntBASIC5.31□□□□□ -1.56
HOXC9P31274 RNA5SP119-201ENST00000362715 117 ntBASIC5.31□□□□□ -1.56
HOXC9P31274 RNU6-650P-201ENST00000365658 111 ntBASIC5.31□□□□□ -1.56
HOXC9P31274 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXC9P31274 RNU6-1176P-201ENST00000390955 107 ntBASIC5.31□□□□□ -1.56
HOXC9P31274 Z86062.1-201ENST00000406773 777 ntBASIC5.31□□□□□ -1.56
HOXC9P31274 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC5.31□□□□□ -1.56
HOXC9P31274 YME1L1P1-201ENST00000429435 297 ntBASIC5.31□□□□□ -1.56
HOXC9P31274 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC5.31□□□□□ -1.56
HOXC9P31274 AL158053.1-201ENST00000441503 453 ntBASIC5.31□□□□□ -1.56
HOXC9P31274 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC5.31□□□□□ -1.56
HOXC9P31274 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXC9P31274 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC5.31□□□□□ -1.56
HOXC9P31274 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC5.31□□□□□ -1.56
HOXC9P31274 SEPT7P3-201ENST00000455017 621 ntBASIC5.31□□□□□ -1.56
HOXC9P31274 CREM-230ENST00000474931 626 ntTSL 2 BASIC5.31□□□□□ -1.56
HOXC9P31274 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.31□□□□□ -1.56
HOXC9P31274 AC016550.1-201ENST00000505348 785 ntBASIC5.31□□□□□ -1.56
HOXC9P31274 RN7SKP157-201ENST00000516174 282 ntBASIC5.31□□□□□ -1.56
HOXC9P31274 AC103833.1-201ENST00000517442 172 ntBASIC5.31□□□□□ -1.56
HOXC9P31274 AC026403.1-201ENST00000518938 295 ntBASIC5.31□□□□□ -1.56
HOXC9P31274 AC087369.1-201ENST00000520775 996 ntBASIC5.31□□□□□ -1.56
HOXC9P31274 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC5.31□□□□□ -1.56
HOXC9P31274 ARL1-211ENST00000551828 776 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXC9P31274 GTF2IP22-201ENST00000554443 182 ntBASIC5.31□□□□□ -1.56
HOXC9P31274 AC007599.1-201ENST00000568688 1174 ntBASIC5.31□□□□□ -1.56
HOXC9P31274 AC079171.1-201ENST00000568788 914 ntBASIC5.31□□□□□ -1.56
HOXC9P31274 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC5.31□□□□□ -1.56
HOXC9P31274 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC5.31□□□□□ -1.56
HOXC9P31274 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXC9P31274 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HOXC9P31274 AC242628.1-201ENST00000606810 391 ntBASIC5.31□□□□□ -1.56
HOXC9P31274 AC005021.1-201ENST00000608730 355 ntBASIC5.31□□□□□ -1.56
HOXC9P31274 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HOXC9P31274 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms