Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL390726.5-202ENST00000564800 256 ntBASIC5.57□□□□□ -1.52
SMARCA1P28370 MIR3936-201ENST00000584304 110 ntBASIC5.57□□□□□ -1.52
SMARCA1P28370 Z99497.2-201ENST00000603634 310 ntBASIC5.57□□□□□ -1.52
SMARCA1P28370 AC096553.1-201ENST00000605169 829 ntBASIC5.57□□□□□ -1.52
SMARCA1P28370 AC018638.7-201ENST00000605836 1114 ntBASIC5.57□□□□□ -1.52
SMARCA1P28370 FAM27B-201ENST00000610601 213 ntBASIC5.57□□□□□ -1.52
SMARCA1P28370 AC107075.1-201ENST00000613695 314 ntBASIC5.57□□□□□ -1.52
SMARCA1P28370 AC015726.3-201ENST00000624501 418 ntBASIC5.57□□□□□ -1.52
SMARCA1P28370 LDHA-225ENST00000625635 141 ntTSL 5 BASIC5.57□□□□□ -1.52
SMARCA1P28370 MFSD8-245ENST00000641743 948 ntBASIC5.57□□□□□ -1.52
SMARCA1P28370 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SMARCA1P28370 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SMARCA1P28370 CASC19-206ENST00000641028 1430 ntBASIC5.57□□□□□ -1.52
SMARCA1P28370 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC5.56□□□□□ -1.52
SMARCA1P28370 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.56□□□□□ -1.52
SMARCA1P28370 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC5.56□□□□□ -1.52
SMARCA1P28370 AC125257.1-201ENST00000560400 2930 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
SMARCA1P28370 MTND4P31-201ENST00000425607 1343 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SMARCA1P28370 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.56□□□□□ -1.52
SMARCA1P28370 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
SMARCA1P28370 FAM133CP-201ENST00000332869 704 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 NACA3P-201ENST00000359690 648 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
SMARCA1P28370 SNORA68.2-201ENST00000391263 128 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 AL356131.1-201ENST00000405826 414 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC5.56□□□□□ -1.52
SMARCA1P28370 AC004074.1-201ENST00000421810 1063 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 AL360081.1-201ENST00000428299 555 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 AL049745.1-201ENST00000433953 286 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 AC005154.2-201ENST00000438110 379 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 CBX1P4-201ENST00000439415 457 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC5.56□□□□□ -1.52
SMARCA1P28370 AL935212.3-201ENST00000450729 284 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SMARCA1P28370 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC5.56□□□□□ -1.52
SMARCA1P28370 MRPL42P4-201ENST00000453267 443 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 RPL35AP28-201ENST00000459730 331 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 RN7SL809P-201ENST00000482040 297 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 AC083982.1-201ENST00000485679 344 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 COX6B1P2-201ENST00000489624 230 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC5.56□□□□□ -1.52
SMARCA1P28370 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC5.56□□□□□ -1.52
SMARCA1P28370 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC5.56□□□□□ -1.52
SMARCA1P28370 RNU6-416P-201ENST00000516265 103 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 AC023632.1-201ENST00000518463 375 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC5.56□□□□□ -1.52
SMARCA1P28370 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC5.56□□□□□ -1.52
SMARCA1P28370 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC5.56□□□□□ -1.52
SMARCA1P28370 PDCL2P2-201ENST00000533651 189 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 ERP27-202ENST00000540097 993 ntTSL 2 BASIC5.56□□□□□ -1.52
SMARCA1P28370 NIFKP8-201ENST00000560500 874 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 AC109446.2-201ENST00000567872 497 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC5.56□□□□□ -1.52
SMARCA1P28370 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC5.56□□□□□ -1.52
SMARCA1P28370 AC233702.9-201ENST00000581528 203 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 VN1R84P-201ENST00000593697 235 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 EIF1P6-201ENST00000600054 334 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 IGKV1OR2-9-201ENST00000603957 287 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 IGKV1OR2-11-201ENST00000604120 287 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 AL358072.1-201ENST00000604156 575 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 AL022161.1-201ENST00000604390 213 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC5.56□□□□□ -1.52
SMARCA1P28370 LGI1-209ENST00000627699 664 ntTSL 3 BASIC5.56□□□□□ -1.52
SMARCA1P28370 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
SMARCA1P28370 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SMARCA1P28370 RNF6P1-201ENST00000444889 1784 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SMARCA1P28370 MUC2-202ENST00000613187 4845 ntBASIC5.56□□□□□ -1.52
SMARCA1P28370 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
SMARCA1P28370 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SMARCA1P28370 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SMARCA1P28370 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC5.56□□□□□ -1.52
SMARCA1P28370 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
SMARCA1P28370 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SMARCA1P28370 MTCO1P6-201ENST00000481192 1384 ntBASIC5.55□□□□□ -1.52
SMARCA1P28370 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
SMARCA1P28370 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SMARCA1P28370 AL513185.3-201ENST00000433335 1300 ntBASIC5.55□□□□□ -1.52
SMARCA1P28370 MAPK10-263ENST00000641052 4307 ntBASIC5.55□□□□□ -1.52
SMARCA1P28370 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC5.55□□□□□ -1.52
SMARCA1P28370 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC5.55□□□□□ -1.52
SMARCA1P28370 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SMARCA1P28370 RNA5SP191-201ENST00000362585 102 ntBASIC5.55□□□□□ -1.52
SMARCA1P28370 SKINT1L-201ENST00000401057 817 ntBASIC5.55□□□□□ -1.52
SMARCA1P28370 U3.35-201ENST00000408405 208 ntBASIC5.55□□□□□ -1.52
SMARCA1P28370 MIR1303-201ENST00000408625 86 ntBASIC5.55□□□□□ -1.52
SMARCA1P28370 RAP1BP1-201ENST00000412709 553 ntBASIC5.55□□□□□ -1.52
SMARCA1P28370 RSU1P3-201ENST00000412878 835 ntBASIC5.55□□□□□ -1.52
SMARCA1P28370 AL139128.1-201ENST00000413921 941 ntBASIC5.55□□□□□ -1.52
SMARCA1P28370 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC5.55□□□□□ -1.52
SMARCA1P28370 AC009302.1-201ENST00000417147 390 ntBASIC5.55□□□□□ -1.52
SMARCA1P28370 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC5.55□□□□□ -1.52
SMARCA1P28370 UBE2V1P1-201ENST00000430836 445 ntBASIC5.55□□□□□ -1.52
SMARCA1P28370 AL359265.2-201ENST00000434367 631 ntBASIC5.55□□□□□ -1.52
SMARCA1P28370 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
SMARCA1P28370 MTND4P32-201ENST00000437189 1237 ntBASIC5.55□□□□□ -1.52
SMARCA1P28370 AL031663.1-201ENST00000437445 219 ntBASIC5.55□□□□□ -1.52
SMARCA1P28370 ELOCP10-201ENST00000440624 327 ntBASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms