Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CYP2C60P-201ENST00000566088 139 ntBASIC5.03□□□□□ -1.6
BDNFP23560 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.03□□□□□ -1.6
BDNFP23560 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC5.03□□□□□ -1.6
BDNFP23560 AC016542.1-201ENST00000608259 493 ntBASIC5.03□□□□□ -1.6
BDNFP23560 AP004247.3-201ENST00000608682 624 ntBASIC5.03□□□□□ -1.6
BDNFP23560 AC078880.5-201ENST00000617845 421 ntBASIC5.03□□□□□ -1.6
BDNFP23560 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC5.03□□□□□ -1.6
BDNFP23560 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC5.03□□□□□ -1.6
BDNFP23560 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC5.03□□□□□ -1.6
BDNFP23560 AC073869.10-201ENST00000642016 354 ntBASIC5.03□□□□□ -1.6
BDNFP23560 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
BDNFP23560 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
BDNFP23560 SMG1P4-204ENST00000523028 4131 ntBASIC5.03□□□□□ -1.6
BDNFP23560 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.03□□□□□ -1.6
BDNFP23560 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
BDNFP23560 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC5.03□□□□□ -1.6
BDNFP23560 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
BDNFP23560 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
BDNFP23560 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
BDNFP23560 MFSD8-216ENST00000641147 4009 ntBASIC5.02□□□□□ -1.61
BDNFP23560 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
BDNFP23560 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
BDNFP23560 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC5.02□□□□□ -1.61
BDNFP23560 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
BDNFP23560 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
BDNFP23560 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
BDNFP23560 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
BDNFP23560 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
BDNFP23560 RNU6-354P-201ENST00000383862 107 ntBASIC5.02□□□□□ -1.61
BDNFP23560 RNU6-468P-201ENST00000384003 109 ntBASIC5.02□□□□□ -1.61
BDNFP23560 RNU6-610P-201ENST00000384264 107 ntBASIC5.02□□□□□ -1.61
BDNFP23560 HMGB3P19-201ENST00000403971 560 ntBASIC5.02□□□□□ -1.61
BDNFP23560 RPL23AP48-201ENST00000406913 488 ntBASIC5.02□□□□□ -1.61
BDNFP23560 RPS3AP9-201ENST00000417027 792 ntBASIC5.02□□□□□ -1.61
BDNFP23560 AC004690.1-201ENST00000418216 328 ntBASIC5.02□□□□□ -1.61
BDNFP23560 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC5.02□□□□□ -1.61
BDNFP23560 AC069213.2-201ENST00000420238 366 ntBASIC5.02□□□□□ -1.61
BDNFP23560 MTCYBP24-201ENST00000420387 1106 ntBASIC5.02□□□□□ -1.61
BDNFP23560 AC233981.1-201ENST00000423224 461 ntBASIC5.02□□□□□ -1.61
BDNFP23560 RGS17P1-201ENST00000423358 553 ntBASIC5.02□□□□□ -1.61
BDNFP23560 COX6CP15-201ENST00000426313 211 ntBASIC5.02□□□□□ -1.61
BDNFP23560 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC5.02□□□□□ -1.61
BDNFP23560 AL359265.2-201ENST00000434367 631 ntBASIC5.02□□□□□ -1.61
BDNFP23560 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC5.02□□□□□ -1.61
BDNFP23560 RPS26P30-201ENST00000443431 335 ntBASIC5.02□□□□□ -1.61
BDNFP23560 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC5.02□□□□□ -1.61
BDNFP23560 AC079168.2-201ENST00000453977 416 ntBASIC5.02□□□□□ -1.61
BDNFP23560 AC093720.1-201ENST00000505681 714 ntBASIC5.02□□□□□ -1.61
BDNFP23560 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC5.02□□□□□ -1.61
BDNFP23560 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
BDNFP23560 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC5.02□□□□□ -1.61
BDNFP23560 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC5.02□□□□□ -1.61
BDNFP23560 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.02□□□□□ -1.61
BDNFP23560 CR383656.14-201ENST00000551951 406 ntBASIC5.02□□□□□ -1.61
BDNFP23560 AL110118.1-201ENST00000553543 400 ntBASIC5.02□□□□□ -1.61
BDNFP23560 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC5.02□□□□□ -1.61
BDNFP23560 AC079075.1-201ENST00000559543 878 ntBASIC5.02□□□□□ -1.61
BDNFP23560 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC5.02□□□□□ -1.61
BDNFP23560 EIF5A2P1-201ENST00000564027 460 ntBASIC5.02□□□□□ -1.61
BDNFP23560 AC068790.7-201ENST00000602347 528 ntBASIC5.02□□□□□ -1.61
BDNFP23560 AC005776.1-201ENST00000603164 290 ntBASIC5.02□□□□□ -1.61
BDNFP23560 IGKV2OR2-2-201ENST00000605025 300 ntBASIC5.02□□□□□ -1.61
BDNFP23560 AP000346.3-201ENST00000622821 210 ntBASIC5.02□□□□□ -1.61
BDNFP23560 AP000943.4-201ENST00000622912 357 ntBASIC5.02□□□□□ -1.61
BDNFP23560 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
BDNFP23560 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.02□□□□□ -1.61
BDNFP23560 MFF-206ENST00000392059 1710 ntTSL 5 BASIC5.02□□□□□ -1.61
BDNFP23560 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
BDNFP23560 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC5.02□□□□□ -1.61
BDNFP23560 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
BDNFP23560 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
BDNFP23560 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
BDNFP23560 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
BDNFP23560 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
BDNFP23560 AL022322.2-201ENST00000624072 20397 ntBASIC5.01□□□□□ -1.61
BDNFP23560 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
BDNFP23560 DDX18P5-201ENST00000534547 1306 ntBASIC5.01□□□□□ -1.61
BDNFP23560 SGO1P1-201ENST00000603525 1447 ntBASIC5.01□□□□□ -1.61
BDNFP23560 AC017079.1-201ENST00000333650 415 ntBASIC5.01□□□□□ -1.61
BDNFP23560 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
BDNFP23560 OR6K3-202ENST00000368146 996 ntBASIC5.01□□□□□ -1.61
BDNFP23560 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC5.01□□□□□ -1.61
BDNFP23560 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC5.01□□□□□ -1.61
BDNFP23560 HYKK-202ENST00000408962 847 ntTSL 5 BASIC5.01□□□□□ -1.61
BDNFP23560 AC073264.1-201ENST00000411508 416 ntBASIC5.01□□□□□ -1.61
BDNFP23560 AL591848.1-201ENST00000413092 322 ntBASIC5.01□□□□□ -1.61
BDNFP23560 OR51A3P-201ENST00000413596 924 ntBASIC5.01□□□□□ -1.61
BDNFP23560 AC119751.6-201ENST00000416712 186 ntBASIC5.01□□□□□ -1.61
BDNFP23560 ATG4AP1-201ENST00000416893 538 ntBASIC5.01□□□□□ -1.61
BDNFP23560 RPS27AP12-201ENST00000429552 465 ntBASIC5.01□□□□□ -1.61
BDNFP23560 AC012512.1-201ENST00000446594 718 ntBASIC5.01□□□□□ -1.61
BDNFP23560 OR51B8P-201ENST00000449892 769 ntBASIC5.01□□□□□ -1.61
BDNFP23560 NDUFA12P1-201ENST00000455914 406 ntBASIC5.01□□□□□ -1.61
BDNFP23560 GYG1P1-201ENST00000460864 698 ntBASIC5.01□□□□□ -1.61
BDNFP23560 AP000873.1-201ENST00000463987 400 ntBASIC5.01□□□□□ -1.61
BDNFP23560 AC091959.2-201ENST00000477363 321 ntBASIC5.01□□□□□ -1.61
BDNFP23560 RN7SL459P-201ENST00000481078 302 ntBASIC5.01□□□□□ -1.61
BDNFP23560 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC5.01□□□□□ -1.61
BDNFP23560 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC5.01□□□□□ -1.61
BDNFP23560 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms