Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD4P09016 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXD4P09016 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HOXD4P09016 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
HOXD4P09016 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXD4P09016 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.75
HOXD4P09016 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HOXD4P09016 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
HOXD4P09016 AC021146.4-201ENST00000309229 279 ntBASIC4.09□□□□□ -1.75
HOXD4P09016 RNA5SP515-201ENST00000364570 118 ntBASIC4.09□□□□□ -1.75
HOXD4P09016 SNORA72.3-201ENST00000365074 132 ntBASIC4.09□□□□□ -1.75
HOXD4P09016 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXD4P09016 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC4.09□□□□□ -1.75
HOXD4P09016 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXD4P09016 RNU4-27P-201ENST00000410889 139 ntBASIC4.09□□□□□ -1.75
HOXD4P09016 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXD4P09016 RPL26P37-201ENST00000411983 438 ntBASIC4.09□□□□□ -1.75
HOXD4P09016 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXD4P09016 SFR1P2-201ENST00000421841 730 ntBASIC4.09□□□□□ -1.75
HOXD4P09016 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXD4P09016 KCTD10P1-201ENST00000434203 625 ntBASIC4.09□□□□□ -1.75
HOXD4P09016 CBX1P1-201ENST00000440184 427 ntBASIC4.09□□□□□ -1.75
HOXD4P09016 AL157827.1-201ENST00000447622 132 ntBASIC4.09□□□□□ -1.75
HOXD4P09016 RN7SL303P-201ENST00000469773 251 ntBASIC4.09□□□□□ -1.75
HOXD4P09016 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.09□□□□□ -1.75
HOXD4P09016 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXD4P09016 MTCO3P27-201ENST00000514397 196 ntBASIC4.09□□□□□ -1.75
HOXD4P09016 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXD4P09016 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.09□□□□□ -1.75
HOXD4P09016 AC084824.1-201ENST00000550917 1005 ntBASIC4.09□□□□□ -1.75
HOXD4P09016 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXD4P09016 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXD4P09016 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.09□□□□□ -1.75
HOXD4P09016 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXD4P09016 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXD4P09016 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXD4P09016 AL158050.2-201ENST00000605336 568 ntBASIC4.09□□□□□ -1.75
HOXD4P09016 AL109618.2-201ENST00000605527 211 ntBASIC4.09□□□□□ -1.75
HOXD4P09016 AC023043.4-201ENST00000612081 449 ntBASIC4.09□□□□□ -1.75
HOXD4P09016 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXD4P09016 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXD4P09016 AC090617.9-201ENST00000623751 147 ntBASIC4.09□□□□□ -1.75
HOXD4P09016 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXD4P09016 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXD4P09016 MTCO1P4-201ENST00000520516 1409 ntBASIC4.09□□□□□ -1.75
HOXD4P09016 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HOXD4P09016 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXD4P09016 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HOXD4P09016 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HOXD4P09016 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
HOXD4P09016 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
HOXD4P09016 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
HOXD4P09016 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
HOXD4P09016 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.09□□□□□ -1.76
HOXD4P09016 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD4P09016 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD4P09016 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD4P09016 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD4P09016 AC025031.4-201ENST00000621248 3271 ntBASIC4.08□□□□□ -1.76
HOXD4P09016 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXD4P09016 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXD4P09016 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.08□□□□□ -1.76
HOXD4P09016 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD4P09016 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD4P09016 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
HOXD4P09016 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD4P09016 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD4P09016 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXD4P09016 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD4P09016 SNORA70C-201ENST00000384538 135 ntBASIC4.08□□□□□ -1.76
HOXD4P09016 MIR513A2-201ENST00000385249 127 ntBASIC4.08□□□□□ -1.76
HOXD4P09016 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD4P09016 ARL4AP5-201ENST00000404372 599 ntBASIC4.08□□□□□ -1.76
HOXD4P09016 EIF4A1P3-201ENST00000411521 244 ntBASIC4.08□□□□□ -1.76
HOXD4P09016 VDAC1P9-201ENST00000412766 841 ntBASIC4.08□□□□□ -1.76
HOXD4P09016 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXD4P09016 MTND4P11-201ENST00000417020 1058 ntBASIC4.08□□□□□ -1.76
HOXD4P09016 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD4P09016 RPL7P57-201ENST00000423238 740 ntBASIC4.08□□□□□ -1.76
HOXD4P09016 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXD4P09016 AL132765.1-201ENST00000434165 553 ntBASIC4.08□□□□□ -1.76
HOXD4P09016 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD4P09016 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD4P09016 PSMC1P13-201ENST00000458195 985 ntBASIC4.08□□□□□ -1.76
HOXD4P09016 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD4P09016 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXD4P09016 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXD4P09016 SLC25A15P5-201ENST00000508033 253 ntBASIC4.08□□□□□ -1.76
HOXD4P09016 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC4.08□□□□□ -1.76
HOXD4P09016 PPBPP1-201ENST00000510807 373 ntBASIC4.08□□□□□ -1.76
HOXD4P09016 IGLV3-26-201ENST00000520756 302 ntBASIC4.08□□□□□ -1.76
HOXD4P09016 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXD4P09016 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXD4P09016 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD4P09016 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXD4P09016 HMGB3P26-201ENST00000560051 582 ntBASIC4.08□□□□□ -1.76
HOXD4P09016 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC4.08□□□□□ -1.76
HOXD4P09016 AC069366.1-201ENST00000583159 838 ntBASIC4.08□□□□□ -1.76
HOXD4P09016 MIR3138-201ENST00000585238 82 ntBASIC4.08□□□□□ -1.76
HOXD4P09016 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms