Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.03□□□□□ -1.76
SHOX2O60902 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC4.03□□□□□ -1.76
SHOX2O60902 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SHOX2O60902 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.03□□□□□ -1.76
SHOX2O60902 EIF4EP5-201ENST00000528228 640 ntBASIC4.03□□□□□ -1.76
SHOX2O60902 AL139174.1-201ENST00000531489 886 ntBASIC4.03□□□□□ -1.76
SHOX2O60902 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC4.03□□□□□ -1.76
SHOX2O60902 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC4.03□□□□□ -1.76
SHOX2O60902 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC4.03□□□□□ -1.76
SHOX2O60902 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC4.03□□□□□ -1.76
SHOX2O60902 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC4.03□□□□□ -1.76
SHOX2O60902 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC4.03□□□□□ -1.76
SHOX2O60902 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC4.03□□□□□ -1.76
SHOX2O60902 AC090246.1-201ENST00000616499 426 ntBASIC4.03□□□□□ -1.76
SHOX2O60902 AC006338.2-201ENST00000616864 791 ntBASIC4.03□□□□□ -1.76
SHOX2O60902 AL356274.1-201ENST00000617064 410 ntBASIC4.03□□□□□ -1.76
SHOX2O60902 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC4.03□□□□□ -1.76
SHOX2O60902 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
SHOX2O60902 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
SHOX2O60902 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
SHOX2O60902 PHKBP1-201ENST00000450951 1951 ntBASIC4.03□□□□□ -1.76
SHOX2O60902 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SHOX2O60902 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
SHOX2O60902 AC058791.1-201ENST00000608412 3198 ntBASIC4.02□□□□□ -1.77
SHOX2O60902 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
SHOX2O60902 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.02□□□□□ -1.77
SHOX2O60902 AC092079.1-201ENST00000558620 1985 ntBASIC4.02□□□□□ -1.77
SHOX2O60902 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.02□□□□□ -1.77
SHOX2O60902 MIR298-201ENST00000401212 88 ntBASIC4.02□□□□□ -1.77
SHOX2O60902 MIR1193-201ENST00000408109 78 ntBASIC4.02□□□□□ -1.77
SHOX2O60902 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC4.02□□□□□ -1.77
SHOX2O60902 AC114814.2-201ENST00000419195 485 ntBASIC4.02□□□□□ -1.77
SHOX2O60902 MOB1AP1-201ENST00000430903 535 ntBASIC4.02□□□□□ -1.77
SHOX2O60902 FTH1P16-201ENST00000435241 552 ntBASIC4.02□□□□□ -1.77
SHOX2O60902 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.02□□□□□ -1.77
SHOX2O60902 AC083863.1-201ENST00000438811 231 ntBASIC4.02□□□□□ -1.77
SHOX2O60902 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.02□□□□□ -1.77
SHOX2O60902 RAB28P3-201ENST00000448325 597 ntBASIC4.02□□□□□ -1.77
SHOX2O60902 RPS17P13-201ENST00000448974 407 ntBASIC4.02□□□□□ -1.77
SHOX2O60902 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.02□□□□□ -1.77
SHOX2O60902 MRPS31P2-201ENST00000451581 518 ntBASIC4.02□□□□□ -1.77
SHOX2O60902 AL136097.1-201ENST00000456945 913 ntBASIC4.02□□□□□ -1.77
SHOX2O60902 AC109327.1-201ENST00000471666 403 ntBASIC4.02□□□□□ -1.77
SHOX2O60902 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC4.02□□□□□ -1.77
SHOX2O60902 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC4.02□□□□□ -1.77
SHOX2O60902 AC008489.1-201ENST00000524271 483 ntBASIC4.02□□□□□ -1.77
SHOX2O60902 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.02□□□□□ -1.77
SHOX2O60902 PDCL2P2-201ENST00000533651 189 ntBASIC4.02□□□□□ -1.77
SHOX2O60902 AC068446.3-201ENST00000555285 382 ntBASIC4.02□□□□□ -1.77
SHOX2O60902 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC4.02□□□□□ -1.77
SHOX2O60902 AC090877.1-201ENST00000561418 344 ntBASIC4.02□□□□□ -1.77
SHOX2O60902 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC4.02□□□□□ -1.77
SHOX2O60902 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.02□□□□□ -1.77
SHOX2O60902 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC4.02□□□□□ -1.77
SHOX2O60902 AL592494.3-201ENST00000609485 464 ntBASIC4.02□□□□□ -1.77
SHOX2O60902 AL133243.1-201ENST00000614487 366 ntBASIC4.02□□□□□ -1.77
SHOX2O60902 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC4.02□□□□□ -1.77
SHOX2O60902 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC4.02□□□□□ -1.77
SHOX2O60902 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
SHOX2O60902 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
SHOX2O60902 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
SHOX2O60902 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
SHOX2O60902 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.02□□□□□ -1.77
SHOX2O60902 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SHOX2O60902 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
SHOX2O60902 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
SHOX2O60902 CEP170P1-201ENST00000502249 4587 ntBASIC4.01□□□□□ -1.77
SHOX2O60902 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
SHOX2O60902 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
SHOX2O60902 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
SHOX2O60902 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
SHOX2O60902 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
SHOX2O60902 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
SHOX2O60902 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.01□□□□□ -1.77
SHOX2O60902 AC126755.2-208ENST00000327792 462 ntBASIC4.01□□□□□ -1.77
SHOX2O60902 AC138969.1-213ENST00000331436 462 ntBASIC4.01□□□□□ -1.77
SHOX2O60902 RPL32P3-201ENST00000359025 275 ntBASIC4.01□□□□□ -1.77
SHOX2O60902 RNU6-283P-201ENST00000364788 107 ntBASIC4.01□□□□□ -1.77
SHOX2O60902 RNA5SP87-201ENST00000384155 118 ntBASIC4.01□□□□□ -1.77
SHOX2O60902 RNA5SP397-201ENST00000391323 118 ntBASIC4.01□□□□□ -1.77
SHOX2O60902 MIR1251-201ENST00000408552 70 ntBASIC4.01□□□□□ -1.77
SHOX2O60902 RPL23AP4-201ENST00000427757 463 ntBASIC4.01□□□□□ -1.77
SHOX2O60902 AC017083.1-201ENST00000428093 483 ntBASIC4.01□□□□□ -1.77
SHOX2O60902 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.01□□□□□ -1.77
SHOX2O60902 RPL12P46-201ENST00000436610 195 ntBASIC4.01□□□□□ -1.77
SHOX2O60902 HMGB1P37-201ENST00000439613 609 ntBASIC4.01□□□□□ -1.77
SHOX2O60902 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC4.01□□□□□ -1.77
SHOX2O60902 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC4.01□□□□□ -1.77
SHOX2O60902 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC4.01□□□□□ -1.77
SHOX2O60902 CLIC4P1-201ENST00000453177 535 ntBASIC4.01□□□□□ -1.77
SHOX2O60902 NANOGP10-201ENST00000453325 895 ntBASIC4.01□□□□□ -1.77
SHOX2O60902 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC4.01□□□□□ -1.77
SHOX2O60902 RPL21P126-201ENST00000470049 478 ntBASIC4.01□□□□□ -1.77
SHOX2O60902 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
SHOX2O60902 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC4.01□□□□□ -1.77
SHOX2O60902 KRTAP5-14P-201ENST00000502328 121 ntBASIC4.01□□□□□ -1.77
SHOX2O60902 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.01□□□□□ -1.77
SHOX2O60902 RN7SKP21-201ENST00000516503 220 ntBASIC4.01□□□□□ -1.77
SHOX2O60902 RN7SKP60-201ENST00000516985 239 ntBASIC4.01□□□□□ -1.77
SHOX2O60902 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms