Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.44□□□□□ -1.7
MSH4O15457 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
MSH4O15457 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
MSH4O15457 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
MSH4O15457 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
MSH4O15457 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
MSH4O15457 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
MSH4O15457 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
MSH4O15457 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
MSH4O15457 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
MSH4O15457 MTCYBP29-201ENST00000436327 1006 ntBASIC4.43□□□□□ -1.7
MSH4O15457 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.43□□□□□ -1.7
MSH4O15457 AL035551.1-201ENST00000446931 348 ntBASIC4.43□□□□□ -1.7
MSH4O15457 AC073587.1-201ENST00000447093 876 ntBASIC4.43□□□□□ -1.7
MSH4O15457 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.43□□□□□ -1.7
MSH4O15457 OR9M1P-201ENST00000459641 921 ntBASIC4.43□□□□□ -1.7
MSH4O15457 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.43□□□□□ -1.7
MSH4O15457 PPIAP15-201ENST00000479662 484 ntBASIC4.43□□□□□ -1.7
MSH4O15457 RPS3AP6-201ENST00000484430 795 ntBASIC4.43□□□□□ -1.7
MSH4O15457 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.43□□□□□ -1.7
MSH4O15457 IGHV3-63-201ENST00000518422 341 ntBASIC4.43□□□□□ -1.7
MSH4O15457 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.43□□□□□ -1.7
MSH4O15457 PTS-202ENST00000524931 696 ntTSL 3 BASIC4.43□□□□□ -1.7
MSH4O15457 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC4.43□□□□□ -1.7
MSH4O15457 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.43□□□□□ -1.7
MSH4O15457 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.43□□□□□ -1.7
MSH4O15457 GNRHR2P1-201ENST00000555315 631 ntBASIC4.43□□□□□ -1.7
MSH4O15457 AC005255.1-201ENST00000593748 216 ntBASIC4.43□□□□□ -1.7
MSH4O15457 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.43□□□□□ -1.7
MSH4O15457 AL109618.2-201ENST00000605527 211 ntBASIC4.43□□□□□ -1.7
MSH4O15457 FP236240.3-201ENST00000623061 327 ntBASIC4.43□□□□□ -1.7
MSH4O15457 AC019080.5-201ENST00000624891 757 ntBASIC4.43□□□□□ -1.7
MSH4O15457 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.43□□□□□ -1.7
MSH4O15457 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.43□□□□□ -1.7
MSH4O15457 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
MSH4O15457 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
MSH4O15457 RNF19BPX-201ENST00000426224 625 ntBASIC4.42□□□□□ -1.7
MSH4O15457 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC4.42□□□□□ -1.7
MSH4O15457 ELOCP18-201ENST00000434209 337 ntBASIC4.42□□□□□ -1.7
MSH4O15457 RANP8-201ENST00000444720 713 ntBASIC4.42□□□□□ -1.7
MSH4O15457 RSL24D1P2-201ENST00000445584 366 ntBASIC4.42□□□□□ -1.7
MSH4O15457 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC4.42□□□□□ -1.7
MSH4O15457 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC4.42□□□□□ -1.7
MSH4O15457 RPL7P24-201ENST00000493052 752 ntBASIC4.42□□□□□ -1.7
MSH4O15457 PPM1AP1-201ENST00000502740 1135 ntBASIC4.42□□□□□ -1.7
MSH4O15457 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC4.42□□□□□ -1.7
MSH4O15457 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.42□□□□□ -1.7
MSH4O15457 NPM1P41-201ENST00000512920 831 ntBASIC4.42□□□□□ -1.7
MSH4O15457 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC4.42□□□□□ -1.7
MSH4O15457 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.42□□□□□ -1.7
MSH4O15457 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC4.42□□□□□ -1.7
MSH4O15457 AC090312.1-201ENST00000580637 348 ntBASIC4.42□□□□□ -1.7
MSH4O15457 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC4.42□□□□□ -1.7
MSH4O15457 AC245128.3-201ENST00000594721 748 ntBASIC4.42□□□□□ -1.7
MSH4O15457 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.42□□□□□ -1.7
MSH4O15457 AC073111.2-201ENST00000605657 1075 ntBASIC4.42□□□□□ -1.7
MSH4O15457 AC034236.3-201ENST00000605999 461 ntBASIC4.42□□□□□ -1.7
MSH4O15457 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.42□□□□□ -1.7
MSH4O15457 AL354798.1-201ENST00000622505 329 ntBASIC4.42□□□□□ -1.7
MSH4O15457 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC4.42□□□□□ -1.7
MSH4O15457 AC119674.1-220ENST00000641502 1048 ntBASIC4.42□□□□□ -1.7
MSH4O15457 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
MSH4O15457 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
MSH4O15457 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
MSH4O15457 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC4.41□□□□□ -1.7
MSH4O15457 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
MSH4O15457 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
MSH4O15457 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.41□□□□□ -1.7
MSH4O15457 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
MSH4O15457 RPL32P23-201ENST00000397237 405 ntBASIC4.41□□□□□ -1.7
MSH4O15457 TCEA1P4-201ENST00000415066 844 ntBASIC4.41□□□□□ -1.7
MSH4O15457 ZNF736P2Y-201ENST00000416040 1279 ntBASIC4.41□□□□□ -1.7
MSH4O15457 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
MSH4O15457 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC4.41□□□□□ -1.7
MSH4O15457 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.41□□□□□ -1.7
MSH4O15457 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC4.41□□□□□ -1.7
MSH4O15457 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
MSH4O15457 AC022431.1-201ENST00000450941 438 ntBASIC4.41□□□□□ -1.7
MSH4O15457 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC4.41□□□□□ -1.7
MSH4O15457 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.41□□□□□ -1.7
MSH4O15457 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC4.41□□□□□ -1.7
MSH4O15457 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC4.41□□□□□ -1.7
MSH4O15457 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC4.41□□□□□ -1.7
MSH4O15457 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
MSH4O15457 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC4.41□□□□□ -1.7
MSH4O15457 AC074029.2-201ENST00000551045 634 ntBASIC4.41□□□□□ -1.7
MSH4O15457 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4.41□□□□□ -1.7
MSH4O15457 AC023813.4-201ENST00000607580 580 ntBASIC4.41□□□□□ -1.7
MSH4O15457 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC4.41□□□□□ -1.7
MSH4O15457 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC4.41□□□□□ -1.7
MSH4O15457 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.41□□□□□ -1.7
MSH4O15457 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
MSH4O15457 AC007342.7-201ENST00000624610 2337 ntBASIC4.41□□□□□ -1.7
MSH4O15457 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
MSH4O15457 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
MSH4O15457 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
MSH4O15457 AC097504.1-201ENST00000515103 2415 ntBASIC4.4□□□□□ -1.7
MSH4O15457 MIR421-201ENST00000365696 85 ntBASIC4.4□□□□□ -1.71
MSH4O15457 AL034374.1-201ENST00000406329 351 ntBASIC4.4□□□□□ -1.71
MSH4O15457 SNX10-203ENST00000409367 746 ntTSL 5 BASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 116.2 ms