Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 Z82217.1-201ENST00000625157 8149 ntBASIC4.94□□□□□ -1.62
SHANK3Q9BYB0 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
SHANK3Q9BYB0 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
SHANK3Q9BYB0 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SHANK3Q9BYB0 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
SHANK3Q9BYB0 SNORA3C-201ENST00000408792 125 ntBASIC4.94□□□□□ -1.62
SHANK3Q9BYB0 EIF4A1P11-201ENST00000451239 222 ntBASIC4.94□□□□□ -1.62
SHANK3Q9BYB0 AC084198.1-201ENST00000477747 402 ntBASIC4.94□□□□□ -1.62
SHANK3Q9BYB0 AC037198.2-201ENST00000478845 733 ntBASIC4.94□□□□□ -1.62
SHANK3Q9BYB0 OR7E13P-201ENST00000526052 910 ntBASIC4.94□□□□□ -1.62
SHANK3Q9BYB0 AC068722.2-201ENST00000618734 544 ntBASIC4.94□□□□□ -1.62
SHANK3Q9BYB0 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.94□□□□□ -1.62
SHANK3Q9BYB0 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.93□□□□□ -1.62
SHANK3Q9BYB0 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SHANK3Q9BYB0 RNF19BPX-201ENST00000426224 625 ntBASIC4.93□□□□□ -1.62
SHANK3Q9BYB0 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC4.93□□□□□ -1.62
SHANK3Q9BYB0 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC4.93□□□□□ -1.62
SHANK3Q9BYB0 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC4.93□□□□□ -1.62
SHANK3Q9BYB0 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC4.93□□□□□ -1.62
SHANK3Q9BYB0 AC026368.1-201ENST00000614934 690 ntBASIC4.93□□□□□ -1.62
SHANK3Q9BYB0 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SHANK3Q9BYB0 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SHANK3Q9BYB0 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.93□□□□□ -1.62
SHANK3Q9BYB0 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SHANK3Q9BYB0 MAPK10-253ENST00000641010 4072 ntBASIC4.93□□□□□ -1.62
SHANK3Q9BYB0 MAPK10-320ENST00000641462 6696 ntBASIC4.93□□□□□ -1.62
SHANK3Q9BYB0 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 UBA52P6-201ENST00000399822 382 ntBASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 AL035423.1-201ENST00000420331 213 ntBASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 Vault.1-201ENST00000516474 102 ntBASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 RNA5SP164-201ENST00000516533 110 ntBASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 IGKV2-38-201ENST00000517443 247 ntBASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 MIR4325-201ENST00000583049 90 ntBASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 MIR3936-201ENST00000584304 110 ntBASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 VDAC2P1-201ENST00000399358 958 ntBASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 AC011742.1-201ENST00000431448 434 ntBASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 PSMC1P13-201ENST00000458195 985 ntBASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 USP9YP2-201ENST00000504503 1000 ntBASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 HMGN1P11-201ENST00000508668 303 ntBASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 USP9YP1-201ENST00000513521 1002 ntBASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 RNU4ATAC17P-201ENST00000517272 120 ntBASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 HMGN2P47-201ENST00000559378 272 ntBASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 AC104763.2-201ENST00000604179 382 ntBASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC4.92□□□□□ -1.62
SHANK3Q9BYB0 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SHANK3Q9BYB0 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC4.91□□□□□ -1.62
SHANK3Q9BYB0 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.91□□□□□ -1.62
SHANK3Q9BYB0 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.91□□□□□ -1.62
SHANK3Q9BYB0 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SHANK3Q9BYB0 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SHANK3Q9BYB0 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
SHANK3Q9BYB0 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.91□□□□□ -1.62
SHANK3Q9BYB0 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
SHANK3Q9BYB0 UBE2V1P2-201ENST00000397758 440 ntBASIC4.91□□□□□ -1.62
SHANK3Q9BYB0 MIR1251-201ENST00000408552 70 ntBASIC4.91□□□□□ -1.62
SHANK3Q9BYB0 DPPA2P2-201ENST00000418220 897 ntBASIC4.91□□□□□ -1.62
SHANK3Q9BYB0 AC017083.1-201ENST00000428093 483 ntBASIC4.91□□□□□ -1.62
SHANK3Q9BYB0 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC4.91□□□□□ -1.62
SHANK3Q9BYB0 Y_RNA.638-201ENST00000459374 113 ntBASIC4.91□□□□□ -1.62
SHANK3Q9BYB0 AC244258.1-201ENST00000637553 1071 ntBASIC4.91□□□□□ -1.62
SHANK3Q9BYB0 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SHANK3Q9BYB0 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SHANK3Q9BYB0 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
SHANK3Q9BYB0 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.91□□□□□ -1.62
SHANK3Q9BYB0 CPD-202ENST00000543464 4007 ntTSL 2 BASIC4.91□□□□□ -1.62
SHANK3Q9BYB0 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.9□□□□□ -1.62
SHANK3Q9BYB0 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
SHANK3Q9BYB0 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
SHANK3Q9BYB0 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.9□□□□□ -1.62
SHANK3Q9BYB0 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SHANK3Q9BYB0 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SHANK3Q9BYB0 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SHANK3Q9BYB0 OSBPL9P1-201ENST00000604744 1469 ntBASIC4.9□□□□□ -1.62
SHANK3Q9BYB0 OR10J6P-201ENST00000289731 930 ntBASIC4.9□□□□□ -1.62
SHANK3Q9BYB0 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SHANK3Q9BYB0 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC4.9□□□□□ -1.62
SHANK3Q9BYB0 ZNF602P-201ENST00000405929 924 ntBASIC4.9□□□□□ -1.62
SHANK3Q9BYB0 AC005326.1-201ENST00000429197 123 ntBASIC4.9□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms