Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC002524.1-201ENST00000411687 547 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 RSU1P3-201ENST00000412878 835 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 FAR2P2-201ENST00000413041 594 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 FAR2P4-202ENST00000425399 584 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 MTND5P25-201ENST00000430499 799 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 RPS6P15-201ENST00000431996 751 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
NUP88Q99567 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC5.69□□□□□ -1.5
NUP88Q99567 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC5.69□□□□□ -1.5
NUP88Q99567 RPL10P17-201ENST00000453852 316 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC5.69□□□□□ -1.5
NUP88Q99567 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC5.69□□□□□ -1.5
NUP88Q99567 RN7SL354P-201ENST00000469282 294 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 RPL12P20-201ENST00000475538 479 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 AC015724.1-201ENST00000478577 156 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 AC119751.5-201ENST00000514077 770 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC5.69□□□□□ -1.5
NUP88Q99567 AC138938.1-201ENST00000515431 782 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 FABP5P12-201ENST00000515543 389 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC5.69□□□□□ -1.5
NUP88Q99567 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC5.69□□□□□ -1.5
NUP88Q99567 AC020937.1-201ENST00000519677 1013 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC5.69□□□□□ -1.5
NUP88Q99567 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC5.69□□□□□ -1.5
NUP88Q99567 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC5.69□□□□□ -1.5
NUP88Q99567 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC5.69□□□□□ -1.5
NUP88Q99567 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC5.69□□□□□ -1.5
NUP88Q99567 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC5.69□□□□□ -1.5
NUP88Q99567 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC5.69□□□□□ -1.5
NUP88Q99567 AC234771.5-201ENST00000600161 514 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC5.69□□□□□ -1.5
NUP88Q99567 AL137072.1-201ENST00000603444 466 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 AL355816.1-201ENST00000607951 118 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 AC007497.1-201ENST00000610421 561 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 AC243654.2-201ENST00000612843 443 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 AL049794.2-201ENST00000616301 365 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 MIR6810-201ENST00000622701 70 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 OR2L1P-202ENST00000641567 1023 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
NUP88Q99567 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
NUP88Q99567 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
NUP88Q99567 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
NUP88Q99567 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC5.69□□□□□ -1.5
NUP88Q99567 BX005019.1-201ENST00000561881 1810 ntBASIC5.69□□□□□ -1.5
NUP88Q99567 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.69□□□□□ -1.5
NUP88Q99567 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
NUP88Q99567 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.68□□□□□ -1.5
NUP88Q99567 AL355852.1-201ENST00000454081 1771 ntBASIC5.68□□□□□ -1.5
NUP88Q99567 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
NUP88Q99567 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.68□□□□□ -1.5
NUP88Q99567 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
NUP88Q99567 RNU2-50P-201ENST00000410494 143 ntBASIC5.68□□□□□ -1.5
NUP88Q99567 OR51A3P-201ENST00000413596 924 ntBASIC5.68□□□□□ -1.5
NUP88Q99567 RPL6P29-201ENST00000414863 865 ntBASIC5.68□□□□□ -1.5
NUP88Q99567 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC5.68□□□□□ -1.5
NUP88Q99567 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
NUP88Q99567 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC5.68□□□□□ -1.5
NUP88Q99567 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC5.68□□□□□ -1.5
NUP88Q99567 AL138878.2-201ENST00000440581 1241 ntBASIC5.68□□□□□ -1.5
NUP88Q99567 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC5.68□□□□□ -1.5
NUP88Q99567 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC5.68□□□□□ -1.5
NUP88Q99567 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC5.68□□□□□ -1.5
NUP88Q99567 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC5.68□□□□□ -1.5
NUP88Q99567 AC079776.3-201ENST00000450665 370 ntBASIC5.68□□□□□ -1.5
NUP88Q99567 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC5.68□□□□□ -1.5
NUP88Q99567 AC006967.1-201ENST00000467608 589 ntBASIC5.68□□□□□ -1.5
NUP88Q99567 RPL7AP10-201ENST00000481016 791 ntBASIC5.68□□□□□ -1.5
NUP88Q99567 AC069304.1-201ENST00000491593 704 ntBASIC5.68□□□□□ -1.5
NUP88Q99567 AC023424.1-201ENST00000496058 459 ntBASIC5.68□□□□□ -1.5
NUP88Q99567 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC5.68□□□□□ -1.5
NUP88Q99567 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC5.68□□□□□ -1.5
NUP88Q99567 AC108043.1-201ENST00000512696 574 ntBASIC5.68□□□□□ -1.5
NUP88Q99567 RAD21-204ENST00000518055 896 ntTSL 2 BASIC5.68□□□□□ -1.5
NUP88Q99567 LY96-202ENST00000518893 430 ntTSL 3 BASIC5.68□□□□□ -1.5
NUP88Q99567 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC5.68□□□□□ -1.5
NUP88Q99567 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.68□□□□□ -1.5
NUP88Q99567 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC5.68□□□□□ -1.5
NUP88Q99567 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC5.68□□□□□ -1.5
NUP88Q99567 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC5.68□□□□□ -1.5
NUP88Q99567 AL049839.1-201ENST00000556151 657 ntBASIC5.68□□□□□ -1.5
NUP88Q99567 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC5.68□□□□□ -1.5
NUP88Q99567 IGKV1OR2-9-201ENST00000603957 287 ntBASIC5.68□□□□□ -1.5
NUP88Q99567 IGKV1OR2-11-201ENST00000604120 287 ntBASIC5.68□□□□□ -1.5
NUP88Q99567 AL390816.3-201ENST00000604527 1066 ntBASIC5.68□□□□□ -1.5
NUP88Q99567 AP003392.5-201ENST00000607857 415 ntBASIC5.68□□□□□ -1.5
NUP88Q99567 AL157770.1-201ENST00000623049 439 ntBASIC5.68□□□□□ -1.5
NUP88Q99567 CR392039.4-201ENST00000624968 501 ntBASIC5.68□□□□□ -1.5
NUP88Q99567 AC073869.10-201ENST00000642016 354 ntBASIC5.68□□□□□ -1.5
NUP88Q99567 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.68□□□□□ -1.5
NUP88Q99567 Z99496.1-201ENST00000469424 1477 ntBASIC5.68□□□□□ -1.5
NUP88Q99567 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.68□□□□□ -1.5
NUP88Q99567 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
NUP88Q99567 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.68□□□□□ -1.5
NUP88Q99567 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.68□□□□□ -1.5
NUP88Q99567 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
NUP88Q99567 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
NUP88Q99567 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
NUP88Q99567 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.68□□□□□ -1.5
NUP88Q99567 Z98755.1-201ENST00000407015 1384 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 127.6 ms